miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5761 5' -56.6 NC_001806.1 + 37789 0.68 0.834808
Target:  5'- gGGCCgGGGCGcGGGgGUCCGCGgg--CGg -3'
miRNA:   3'- -CCGG-UCCGC-UCUgCAGGUGCaugaGC- -5'
5761 5' -56.6 NC_001806.1 + 38224 0.69 0.792106
Target:  5'- cGUCGGaCGAGGCGUCUggGUGCUgGg -3'
miRNA:   3'- cCGGUCcGCUCUGCAGGugCAUGAgC- -5'
5761 5' -56.6 NC_001806.1 + 38284 0.66 0.893599
Target:  5'- cGCCGGGCGAGcgGCGUCgA-GUA-UCGg -3'
miRNA:   3'- cCGGUCCGCUC--UGCAGgUgCAUgAGC- -5'
5761 5' -56.6 NC_001806.1 + 38632 0.66 0.886302
Target:  5'- cGGCCGGGUGguGGAUGUCCuuauaccCGUggugccggggccgGCUCu -3'
miRNA:   3'- -CCGGUCCGC--UCUGCAGGu------GCA-------------UGAGc -5'
5761 5' -56.6 NC_001806.1 + 41478 0.79 0.269008
Target:  5'- cGGCCAGGCGAG-CGUCcCGCGUuaugCGg -3'
miRNA:   3'- -CCGGUCCGCUCuGCAG-GUGCAuga-GC- -5'
5761 5' -56.6 NC_001806.1 + 44131 0.67 0.873083
Target:  5'- cGCUcGGgGGGGCcUCCGCGUcaaACUCGu -3'
miRNA:   3'- cCGGuCCgCUCUGcAGGUGCA---UGAGC- -5'
5761 5' -56.6 NC_001806.1 + 44446 0.7 0.726733
Target:  5'- aGGCCgcGGGCccGGCGUCCGCGUGg--- -3'
miRNA:   3'- -CCGG--UCCGcuCUGCAGGUGCAUgagc -5'
5761 5' -56.6 NC_001806.1 + 49857 0.67 0.865822
Target:  5'- aGCaGGGCGAGGCGUuggCCugGUAUaUCa -3'
miRNA:   3'- cCGgUCCGCUCUGCA---GGugCAUG-AGc -5'
5761 5' -56.6 NC_001806.1 + 61539 0.67 0.880136
Target:  5'- cGGUCGGGCGGGGgcUUgGCGUGCcCGc -3'
miRNA:   3'- -CCGGUCCGCUCUgcAGgUGCAUGaGC- -5'
5761 5' -56.6 NC_001806.1 + 61801 0.8 0.228028
Target:  5'- uGGCCGGGUGGuuGAUGguaccggCCACGUACUCGc -3'
miRNA:   3'- -CCGGUCCGCU--CUGCa------GGUGCAUGAGC- -5'
5761 5' -56.6 NC_001806.1 + 67235 0.71 0.687453
Target:  5'- gGGCCAGGUGAGGCagGUCgGCGgggUGC-CGc -3'
miRNA:   3'- -CCGGUCCGCUCUG--CAGgUGC---AUGaGC- -5'
5761 5' -56.6 NC_001806.1 + 71103 0.66 0.886976
Target:  5'- cGGCCcccuGGGCcAGACGaCCGCGguuccggACUCc -3'
miRNA:   3'- -CCGG----UCCGcUCUGCaGGUGCa------UGAGc -5'
5761 5' -56.6 NC_001806.1 + 73303 0.66 0.886976
Target:  5'- uGGCCc-GCGAGGuCG-CCGCGUGUUCGc -3'
miRNA:   3'- -CCGGucCGCUCU-GCaGGUGCAUGAGC- -5'
5761 5' -56.6 NC_001806.1 + 75221 0.66 0.900002
Target:  5'- cGGCCGuGCGGGcgcaccGCGUCCugGUcgACgCGg -3'
miRNA:   3'- -CCGGUcCGCUC------UGCAGGugCA--UGaGC- -5'
5761 5' -56.6 NC_001806.1 + 77386 0.7 0.697361
Target:  5'- gGGCgCGGGCGcGGCGgCCGCGcccgcgccccUGCUCGu -3'
miRNA:   3'- -CCG-GUCCGCuCUGCaGGUGC----------AUGAGC- -5'
5761 5' -56.6 NC_001806.1 + 84337 0.67 0.873083
Target:  5'- -uCCGGGCcuccGugGUCCGC-UACUCGg -3'
miRNA:   3'- ccGGUCCGcu--CugCAGGUGcAUGAGC- -5'
5761 5' -56.6 NC_001806.1 + 86039 0.66 0.917294
Target:  5'- gGGCCgcgggggGGGCGGGcuCGUCCccuggggcggcgGCGUcuaGCUCGc -3'
miRNA:   3'- -CCGG-------UCCGCUCu-GCAGG------------UGCA---UGAGC- -5'
5761 5' -56.6 NC_001806.1 + 92904 0.66 0.916163
Target:  5'- cGGCCgcgugguccgcgcaGGGCGGGGCGggCCugGagGC-CGg -3'
miRNA:   3'- -CCGG--------------UCCGCUCUGCa-GGugCa-UGaGC- -5'
5761 5' -56.6 NC_001806.1 + 92980 0.7 0.736378
Target:  5'- -uCCGGGCGcguGGACGUCCAUGU--UCGc -3'
miRNA:   3'- ccGGUCCGC---UCUGCAGGUGCAugAGC- -5'
5761 5' -56.6 NC_001806.1 + 93448 0.69 0.792106
Target:  5'- cGGCaacGGCGAGugGUCgACGgACgCGg -3'
miRNA:   3'- -CCGgu-CCGCUCugCAGgUGCaUGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.