miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5761 5' -56.6 NC_001806.1 + 2592 0.7 0.696373
Target:  5'- cGCCAGgggacggggaacaGCGGGugGUCCGUGaGCUCGg -3'
miRNA:   3'- cCGGUC-------------CGCUCugCAGGUGCaUGAGC- -5'
5761 5' -56.6 NC_001806.1 + 2766 0.67 0.858358
Target:  5'- gGGCgCGGGCGGGccuGCG-CCGCGgcgGCcCGg -3'
miRNA:   3'- -CCG-GUCCGCUC---UGCaGGUGCa--UGaGC- -5'
5761 5' -56.6 NC_001806.1 + 2869 0.75 0.453205
Target:  5'- gGGCgCGGGCGuccgagccggGGGCGUCCGCGccGCUCu -3'
miRNA:   3'- -CCG-GUCCGC----------UCUGCAGGUGCa-UGAGc -5'
5761 5' -56.6 NC_001806.1 + 3086 0.68 0.80966
Target:  5'- aGGuCCGcGGCGGcGGCGgCCGCGgaGCUCGg -3'
miRNA:   3'- -CC-GGU-CCGCU-CUGCaGGUGCa-UGAGC- -5'
5761 5' -56.6 NC_001806.1 + 3282 0.75 0.462272
Target:  5'- cGCgCAGGCGGGgcGCGUCgGCGUGCggCGg -3'
miRNA:   3'- cCG-GUCCGCUC--UGCAGgUGCAUGa-GC- -5'
5761 5' -56.6 NC_001806.1 + 3444 0.69 0.755397
Target:  5'- cGGCCAGGCacucGACGgCCACGcgGC-CGg -3'
miRNA:   3'- -CCGGUCCGcu--CUGCaGGUGCa-UGaGC- -5'
5761 5' -56.6 NC_001806.1 + 3795 0.67 0.865822
Target:  5'- uGGCCAcGGCG-GcCG-CCGCGUGCg-- -3'
miRNA:   3'- -CCGGU-CCGCuCuGCaGGUGCAUGagc -5'
5761 5' -56.6 NC_001806.1 + 4431 0.67 0.861368
Target:  5'- uGGcCCGGGCGGGggcgGCGUCCgcccgggggcugccgGCGccgcGCUCGa -3'
miRNA:   3'- -CC-GGUCCGCUC----UGCAGG---------------UGCa---UGAGC- -5'
5761 5' -56.6 NC_001806.1 + 4760 0.67 0.865822
Target:  5'- cGCCGgcGGCGucggcuGCGUCguCGUACUCGu -3'
miRNA:   3'- cCGGU--CCGCuc----UGCAGguGCAUGAGC- -5'
5761 5' -56.6 NC_001806.1 + 4846 0.66 0.886976
Target:  5'- gGGUCGGGCGucgGGAuCGUCCggACGgcCUCc -3'
miRNA:   3'- -CCGGUCCGC---UCU-GCAGG--UGCauGAGc -5'
5761 5' -56.6 NC_001806.1 + 4899 0.67 0.850697
Target:  5'- aGCCAgcugucgcGGCGAGacgGCGUCCccgGCGUcCUCGc -3'
miRNA:   3'- cCGGU--------CCGCUC---UGCAGG---UGCAuGAGC- -5'
5761 5' -56.6 NC_001806.1 + 7039 0.68 0.80966
Target:  5'- gGGCCGGGCGAcccaGAUGUUUacuuaaaagGCGUGC-CGu -3'
miRNA:   3'- -CCGGUCCGCU----CUGCAGG---------UGCAUGaGC- -5'
5761 5' -56.6 NC_001806.1 + 10002 0.67 0.858358
Target:  5'- cGCCAGcccCGGGACGggcUCCAUGUGagcCUCGg -3'
miRNA:   3'- cCGGUCc--GCUCUGC---AGGUGCAU---GAGC- -5'
5761 5' -56.6 NC_001806.1 + 10088 1.1 0.002485
Target:  5'- cGGCCAGGCGAGACGUCCACGUACUCGc -3'
miRNA:   3'- -CCGGUCCGCUCUGCAGGUGCAUGAGC- -5'
5761 5' -56.6 NC_001806.1 + 12826 0.68 0.824096
Target:  5'- uGGCCGGGgGAugguaaggcgucgcGGCGUCCugGa--UCGa -3'
miRNA:   3'- -CCGGUCCgCU--------------CUGCAGGugCaugAGC- -5'
5761 5' -56.6 NC_001806.1 + 14564 0.66 0.917856
Target:  5'- aGGCCuGGCucAGACGUCCGuuggcCGU-UUCGg -3'
miRNA:   3'- -CCGGuCCGc-UCUGCAGGU-----GCAuGAGC- -5'
5761 5' -56.6 NC_001806.1 + 16475 0.66 0.912132
Target:  5'- uGGCCAuGGuCGAGGgGggcuugccgCCGCGgcugaugGCUCGa -3'
miRNA:   3'- -CCGGU-CC-GCUCUgCa--------GGUGCa------UGAGC- -5'
5761 5' -56.6 NC_001806.1 + 20188 0.67 0.873083
Target:  5'- gGGCCGGcGCGGagucgggcacGGCG-CCA-GUGCUCGc -3'
miRNA:   3'- -CCGGUC-CGCU----------CUGCaGGUgCAUGAGC- -5'
5761 5' -56.6 NC_001806.1 + 30385 0.67 0.880136
Target:  5'- uGCCGGGCGcgugcGACGguggCGCGcgGCUCGg -3'
miRNA:   3'- cCGGUCCGCu----CUGCag--GUGCa-UGAGC- -5'
5761 5' -56.6 NC_001806.1 + 35502 0.68 0.80966
Target:  5'- cGGagaGGGCGAGGCGUCggaGCGgggccGCUCa -3'
miRNA:   3'- -CCgg-UCCGCUCUGCAGg--UGCa----UGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.