miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5761 5' -56.6 NC_001806.1 + 10088 1.1 0.002485
Target:  5'- cGGCCAGGCGAGACGUCCACGUACUCGc -3'
miRNA:   3'- -CCGGUCCGCUCUGCAGGUGCAUGAGC- -5'
5761 5' -56.6 NC_001806.1 + 61801 0.8 0.228028
Target:  5'- uGGCCGGGUGGuuGAUGguaccggCCACGUACUCGc -3'
miRNA:   3'- -CCGGUCCGCU--CUGCa------GGUGCAUGAGC- -5'
5761 5' -56.6 NC_001806.1 + 41478 0.79 0.269008
Target:  5'- cGGCCAGGCGAG-CGUCcCGCGUuaugCGg -3'
miRNA:   3'- -CCGGUCCGCUCuGCAG-GUGCAuga-GC- -5'
5761 5' -56.6 NC_001806.1 + 109235 0.76 0.3844
Target:  5'- gGGCCGGGCGGGGCGgaaUCCugGgcCcCGg -3'
miRNA:   3'- -CCGGUCCGCUCUGC---AGGugCauGaGC- -5'
5761 5' -56.6 NC_001806.1 + 101160 0.75 0.435367
Target:  5'- aGCCAGcGCG-GugGUCCACGUuaaUCGg -3'
miRNA:   3'- cCGGUC-CGCuCugCAGGUGCAug-AGC- -5'
5761 5' -56.6 NC_001806.1 + 2869 0.75 0.453205
Target:  5'- gGGCgCGGGCGuccgagccggGGGCGUCCGCGccGCUCu -3'
miRNA:   3'- -CCG-GUCCGC----------UCUGCAGGUGCa-UGAGc -5'
5761 5' -56.6 NC_001806.1 + 3282 0.75 0.462272
Target:  5'- cGCgCAGGCGGGgcGCGUCgGCGUGCggCGg -3'
miRNA:   3'- cCG-GUCCGCUC--UGCAGgUGCAUGa-GC- -5'
5761 5' -56.6 NC_001806.1 + 137926 0.72 0.607283
Target:  5'- cGCCAGaGCGAGaACGUgcUCACGUACcUCa -3'
miRNA:   3'- cCGGUC-CGCUC-UGCA--GGUGCAUG-AGc -5'
5761 5' -56.6 NC_001806.1 + 129088 0.71 0.677502
Target:  5'- cGGCCAGGUGcgugacuGugGUCCGCGcGC-Ca -3'
miRNA:   3'- -CCGGUCCGCu------CugCAGGUGCaUGaGc -5'
5761 5' -56.6 NC_001806.1 + 67235 0.71 0.687453
Target:  5'- gGGCCAGGUGAGGCagGUCgGCGgggUGC-CGc -3'
miRNA:   3'- -CCGGUCCGCUCUG--CAGgUGC---AUGaGC- -5'
5761 5' -56.6 NC_001806.1 + 132555 0.71 0.687453
Target:  5'- aGGuCCGGGgGGGAccCGUCC-CGUACUUu -3'
miRNA:   3'- -CC-GGUCCgCUCU--GCAGGuGCAUGAGc -5'
5761 5' -56.6 NC_001806.1 + 2592 0.7 0.696373
Target:  5'- cGCCAGgggacggggaacaGCGGGugGUCCGUGaGCUCGg -3'
miRNA:   3'- cCGGUC-------------CGCUCugCAGGUGCaUGAGC- -5'
5761 5' -56.6 NC_001806.1 + 77386 0.7 0.697361
Target:  5'- gGGCgCGGGCGcGGCGgCCGCGcccgcgccccUGCUCGu -3'
miRNA:   3'- -CCG-GUCCGCuCUGCaGGUGC----------AUGAGC- -5'
5761 5' -56.6 NC_001806.1 + 133345 0.7 0.71701
Target:  5'- aGCCAGGCGGgaguGugGUUCugGaACUCc -3'
miRNA:   3'- cCGGUCCGCU----CugCAGGugCaUGAGc -5'
5761 5' -56.6 NC_001806.1 + 44446 0.7 0.726733
Target:  5'- aGGCCgcGGGCccGGCGUCCGCGUGg--- -3'
miRNA:   3'- -CCGG--UCCGcuCUGCAGGUGCAUgagc -5'
5761 5' -56.6 NC_001806.1 + 92980 0.7 0.736378
Target:  5'- -uCCGGGCGcguGGACGUCCAUGU--UCGc -3'
miRNA:   3'- ccGGUCCGC---UCUGCAGGUGCAugAGC- -5'
5761 5' -56.6 NC_001806.1 + 151449 0.69 0.745935
Target:  5'- gGGCgGcGGCGGGGCGgCCGCGggcgcGCUCc -3'
miRNA:   3'- -CCGgU-CCGCUCUGCaGGUGCa----UGAGc -5'
5761 5' -56.6 NC_001806.1 + 3444 0.69 0.755397
Target:  5'- cGGCCAGGCacucGACGgCCACGcgGC-CGg -3'
miRNA:   3'- -CCGGUCCGcu--CUGCaGGUGCa-UGaGC- -5'
5761 5' -56.6 NC_001806.1 + 93448 0.69 0.792106
Target:  5'- cGGCaacGGCGAGugGUCgACGgACgCGg -3'
miRNA:   3'- -CCGgu-CCGCUCugCAGgUGCaUGaGC- -5'
5761 5' -56.6 NC_001806.1 + 38224 0.69 0.792106
Target:  5'- cGUCGGaCGAGGCGUCUggGUGCUgGg -3'
miRNA:   3'- cCGGUCcGCUCUGCAGGugCAUGAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.