miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5762 3' -63.6 NC_001806.1 + 3468 0.67 0.476663
Target:  5'- gGCCgGCCuGGGCgcgGCGCCcgGCGUCGu- -3'
miRNA:   3'- gCGGgCGG-UCCG---UGCGGa-CGCGGUug -5'
5762 3' -63.6 NC_001806.1 + 3619 0.69 0.351949
Target:  5'- gCGCUCGCCcGGUGCGgCgGCGgCGACg -3'
miRNA:   3'- -GCGGGCGGuCCGUGCgGaCGCgGUUG- -5'
5762 3' -63.6 NC_001806.1 + 3694 0.66 0.561096
Target:  5'- -cCCCGUCAGcGC-CGCgUucucgcGCGCCAACa -3'
miRNA:   3'- gcGGGCGGUC-CGuGCGgA------CGCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 3812 0.69 0.390891
Target:  5'- gCGUgCGCCAGGCcccaGCCgaaGCGgCCGGCc -3'
miRNA:   3'- -GCGgGCGGUCCGug--CGGa--CGC-GGUUG- -5'
5762 3' -63.6 NC_001806.1 + 3855 0.71 0.289014
Target:  5'- aGCCCagGUgGGGCACgGCCcGCGCCAc- -3'
miRNA:   3'- gCGGG--CGgUCCGUG-CGGaCGCGGUug -5'
5762 3' -63.6 NC_001806.1 + 3917 0.66 0.561096
Target:  5'- gCGCCCGagauCCGGaaGCAgGCCUG-GuCCAGCg -3'
miRNA:   3'- -GCGGGC----GGUC--CGUgCGGACgC-GGUUG- -5'
5762 3' -63.6 NC_001806.1 + 4051 0.67 0.467655
Target:  5'- uCGCCCaGCuCGGGCGCccacacggccGCCgggGCGCCc-- -3'
miRNA:   3'- -GCGGG-CG-GUCCGUG----------CGGa--CGCGGuug -5'
5762 3' -63.6 NC_001806.1 + 4448 0.72 0.246433
Target:  5'- gCGUCCGCCcggGGGCugccgGCGCC-GCGCuCGACg -3'
miRNA:   3'- -GCGGGCGG---UCCG-----UGCGGaCGCG-GUUG- -5'
5762 3' -63.6 NC_001806.1 + 4739 0.67 0.467655
Target:  5'- gGCCCcggGCCgGGGCccgguCGCCggcgGCGUCGGCu -3'
miRNA:   3'- gCGGG---CGG-UCCGu----GCGGa---CGCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 5578 0.68 0.415567
Target:  5'- cCGCCCcgacGCC-GGCACGCCggGgGCCc-- -3'
miRNA:   3'- -GCGGG----CGGuCCGUGCGGa-CgCGGuug -5'
5762 3' -63.6 NC_001806.1 + 5862 0.69 0.367191
Target:  5'- cCGCCCGCCGG--ACGCC-GgGaCCAACg -3'
miRNA:   3'- -GCGGGCGGUCcgUGCGGaCgC-GGUUG- -5'
5762 3' -63.6 NC_001806.1 + 5909 0.67 0.457849
Target:  5'- cCGCCCGCCuuGC-CGCCcccccauUG-GCCGGCg -3'
miRNA:   3'- -GCGGGCGGucCGuGCGG-------ACgCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 8743 0.74 0.194765
Target:  5'- uGCCgaCGCagCGGGUGCGUCUGCGUCGACg -3'
miRNA:   3'- gCGG--GCG--GUCCGUGCGGACGCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 9657 1.09 0.000518
Target:  5'- cCGCCCGCCAGGCACGCCUGCGCCAACa -3'
miRNA:   3'- -GCGGGCGGUCCGUGCGGACGCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 12769 0.68 0.449909
Target:  5'- gGgCUGCCAGGagacugcCGCCcaccGCGCCGGCg -3'
miRNA:   3'- gCgGGCGGUCCgu-----GCGGa---CGCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 13617 0.67 0.457849
Target:  5'- gGUCCGgUAGGCcCGCCUggaugugguacacGCGCCGGa -3'
miRNA:   3'- gCGGGCgGUCCGuGCGGA-------------CGCGGUUg -5'
5762 3' -63.6 NC_001806.1 + 19054 0.66 0.513508
Target:  5'- cCGCCUcuggGCCuGGCGCaCCgaGCGCCGuaGCa -3'
miRNA:   3'- -GCGGG----CGGuCCGUGcGGa-CGCGGU--UG- -5'
5762 3' -63.6 NC_001806.1 + 20166 0.69 0.39901
Target:  5'- cCGCCgC-CCGGGCcCGCCcccgGgGCCGGCg -3'
miRNA:   3'- -GCGG-GcGGUCCGuGCGGa---CgCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 20366 0.68 0.407236
Target:  5'- cCGCCCGCCGucccGUugGUCccgGCGuCCGGCg -3'
miRNA:   3'- -GCGGGCGGUc---CGugCGGa--CGC-GGUUG- -5'
5762 3' -63.6 NC_001806.1 + 20720 0.73 0.204279
Target:  5'- gGCCCGCCGGGgGgGCgggGgGCCGGCg -3'
miRNA:   3'- gCGGGCGGUCCgUgCGga-CgCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.