miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5762 3' -63.6 NC_001806.1 + 319 0.7 0.344497
Target:  5'- aCGCCCGCCGcGCGCGCgcaCGCCGc- -3'
miRNA:   3'- -GCGGGCGGUcCGUGCGgacGCGGUug -5'
5762 3' -63.6 NC_001806.1 + 353 0.72 0.264011
Target:  5'- cCGCCCGCCuuuuuuGcGCGCGCgC-GCGCCcGCg -3'
miRNA:   3'- -GCGGGCGGu-----C-CGUGCG-GaCGCGGuUG- -5'
5762 3' -63.6 NC_001806.1 + 1575 0.67 0.49493
Target:  5'- gCGCaCCGCCucGCGCcCCaGCGCCAcguACa -3'
miRNA:   3'- -GCG-GGCGGucCGUGcGGaCGCGGU---UG- -5'
5762 3' -63.6 NC_001806.1 + 1608 0.67 0.458737
Target:  5'- gGgCCGCagcGGCGCGCCcagGCcCCAGCg -3'
miRNA:   3'- gCgGGCGgu-CCGUGCGGa--CGcGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 1669 0.69 0.367191
Target:  5'- uCGCagaaGUCcGGCGCGCCggGCGCCAugGCg -3'
miRNA:   3'- -GCGgg--CGGuCCGUGCGGa-CGCGGU--UG- -5'
5762 3' -63.6 NC_001806.1 + 1715 0.69 0.39901
Target:  5'- aGgCCGCCGcccGGC-CGuCCaGCGCCGGCa -3'
miRNA:   3'- gCgGGCGGU---CCGuGC-GGaCGCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 1955 0.67 0.476663
Target:  5'- cCGCCgGCCAGcGCACGgcgcaCUGCacgGCgGGCa -3'
miRNA:   3'- -GCGGgCGGUC-CGUGCg----GACG---CGgUUG- -5'
5762 3' -63.6 NC_001806.1 + 1996 0.68 0.432539
Target:  5'- uGCaCGCCAGGUAgGCgUGCuGCCGcgACa -3'
miRNA:   3'- gCGgGCGGUCCGUgCGgACG-CGGU--UG- -5'
5762 3' -63.6 NC_001806.1 + 2031 0.67 0.483019
Target:  5'- gGCCCGUcggcgggccagucgCAGGCGCGCacgGUGUUGACc -3'
miRNA:   3'- gCGGGCG--------------GUCCGUGCGga-CGCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 2160 0.7 0.329938
Target:  5'- aGCaCGCCcuGUGCGCCcaGCGCCGACa -3'
miRNA:   3'- gCGgGCGGucCGUGCGGa-CGCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 2232 0.73 0.214193
Target:  5'- gGCCCGCaCAgccGGUugGCCaggGCcGCCAGCa -3'
miRNA:   3'- gCGGGCG-GU---CCGugCGGa--CG-CGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 2322 0.68 0.441176
Target:  5'- cCGCCgGCCAGGUccuCGCCcggcagcgGCGaguaCAGCa -3'
miRNA:   3'- -GCGGgCGGUCCGu--GCGGa-------CGCg---GUUG- -5'
5762 3' -63.6 NC_001806.1 + 2425 0.67 0.504182
Target:  5'- gGCCCG--AGGCGCGCaggGgGCCAAa -3'
miRNA:   3'- gCGGGCggUCCGUGCGga-CgCGGUUg -5'
5762 3' -63.6 NC_001806.1 + 2759 0.75 0.15662
Target:  5'- gGCCacgggGCgCGGGCGgGCCUGCGCCGcgGCg -3'
miRNA:   3'- gCGGg----CG-GUCCGUgCGGACGCGGU--UG- -5'
5762 3' -63.6 NC_001806.1 + 2877 0.7 0.329938
Target:  5'- gCGUCCgaGCCGGGgGCGUCcGCGCCGc- -3'
miRNA:   3'- -GCGGG--CGGUCCgUGCGGaCGCGGUug -5'
5762 3' -63.6 NC_001806.1 + 2934 0.7 0.32495
Target:  5'- cCGCCUccgggcgGCCGGGCcgggccgggacucuuGCGCUUGCGCCc-- -3'
miRNA:   3'- -GCGGG-------CGGUCCG---------------UGCGGACGCGGuug -5'
5762 3' -63.6 NC_001806.1 + 3005 0.66 0.513508
Target:  5'- gCGgCCGCCA-GCGCGUCggcggcguccggUGCGCUGGCc -3'
miRNA:   3'- -GCgGGCGGUcCGUGCGG------------ACGCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 3111 0.69 0.359513
Target:  5'- aGCUCGgCAGGCGCGgguCCcGCGgCAGCg -3'
miRNA:   3'- gCGGGCgGUCCGUGC---GGaCGCgGUUG- -5'
5762 3' -63.6 NC_001806.1 + 3279 0.66 0.570771
Target:  5'- aCGCgCGCaggcgGGGCGCGUCgGCGUgCGGCg -3'
miRNA:   3'- -GCGgGCGg----UCCGUGCGGaCGCG-GUUG- -5'
5762 3' -63.6 NC_001806.1 + 3386 0.69 0.37498
Target:  5'- aCGgCCGCCAGGU-CGCCgucgaaGCccucgGCCAGCg -3'
miRNA:   3'- -GCgGGCGGUCCGuGCGGa-----CG-----CGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.