miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5762 3' -63.6 NC_001806.1 + 9657 1.09 0.000518
Target:  5'- cCGCCCGCCAGGCACGCCUGCGCCAACa -3'
miRNA:   3'- -GCGGGCGGUCCGUGCGGACGCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 26960 0.8 0.071727
Target:  5'- cCGCCCGCCuGGCGCGCCgcggcucgUGgGCCcGCg -3'
miRNA:   3'- -GCGGGCGGuCCGUGCGG--------ACgCGGuUG- -5'
5762 3' -63.6 NC_001806.1 + 87121 0.8 0.071727
Target:  5'- uGCCCGCCuccAGGUGCGCCacUGCGUCGGCc -3'
miRNA:   3'- gCGGGCGG---UCCGUGCGG--ACGCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 26779 0.77 0.10976
Target:  5'- cCGCCUGCgcgucaccgcggagCAccuGGCGCGCCUGCGCCuGCg -3'
miRNA:   3'- -GCGGGCG--------------GU---CCGUGCGGACGCGGuUG- -5'
5762 3' -63.6 NC_001806.1 + 24276 0.75 0.152825
Target:  5'- uGCCCGCCGuGCaguGCGCCgUGCGCUGGCc -3'
miRNA:   3'- gCGGGCGGUcCG---UGCGG-ACGCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 2759 0.75 0.15662
Target:  5'- gGCCacgggGCgCGGGCGgGCCUGCGCCGcgGCg -3'
miRNA:   3'- gCGGg----CG-GUCCGUgCGGACGCGGU--UG- -5'
5762 3' -63.6 NC_001806.1 + 47704 0.75 0.164466
Target:  5'- uGCaCCGCCAGGCGCaCaUGCGCgGACg -3'
miRNA:   3'- gCG-GGCGGUCCGUGcGgACGCGgUUG- -5'
5762 3' -63.6 NC_001806.1 + 45480 0.75 0.168519
Target:  5'- uGgCUGCCGGGCACGCCUGaaccCGCCc-- -3'
miRNA:   3'- gCgGGCGGUCCGUGCGGAC----GCGGuug -5'
5762 3' -63.6 NC_001806.1 + 89579 0.75 0.168519
Target:  5'- gGCCgGCCGGGCuuauggacCGCCgGCGgCCGACa -3'
miRNA:   3'- gCGGgCGGUCCGu-------GCGGaCGC-GGUUG- -5'
5762 3' -63.6 NC_001806.1 + 107037 0.74 0.185641
Target:  5'- cCGCCCGCgGGGC-CGCgggCUGUGCCGc- -3'
miRNA:   3'- -GCGGGCGgUCCGuGCG---GACGCGGUug -5'
5762 3' -63.6 NC_001806.1 + 35543 0.74 0.185641
Target:  5'- cCGCCCagcgaGCCGcucGGCGCGCCcgGCGCCGc- -3'
miRNA:   3'- -GCGGG-----CGGU---CCGUGCGGa-CGCGGUug -5'
5762 3' -63.6 NC_001806.1 + 135065 0.74 0.188338
Target:  5'- gGcCCCGCgGGGaCGCGCCgggccggaaaucgGCGCCGACc -3'
miRNA:   3'- gC-GGGCGgUCC-GUGCGGa------------CGCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 8743 0.74 0.194765
Target:  5'- uGCCgaCGCagCGGGUGCGUCUGCGUCGACg -3'
miRNA:   3'- gCGG--GCG--GUCCGUGCGGACGCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 148147 0.74 0.194765
Target:  5'- cCGCCCGUCacgggGGGCGCGgCgGCGCCucuGCg -3'
miRNA:   3'- -GCGGGCGG-----UCCGUGCgGaCGCGGu--UG- -5'
5762 3' -63.6 NC_001806.1 + 22652 0.74 0.194765
Target:  5'- uGCCCGCCGGGUACG---GCGCCGc- -3'
miRNA:   3'- gCGGGCGGUCCGUGCggaCGCGGUug -5'
5762 3' -63.6 NC_001806.1 + 79688 0.74 0.194765
Target:  5'- cCGacaCCGCCGGGCACGCUcccuggcgcGCGCCAc- -3'
miRNA:   3'- -GCg--GGCGGUCCGUGCGGa--------CGCGGUug -5'
5762 3' -63.6 NC_001806.1 + 20720 0.73 0.204279
Target:  5'- gGCCCGCCGGGgGgGCgggGgGCCGGCg -3'
miRNA:   3'- gCGGGCGGUCCgUgCGga-CgCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 136318 0.73 0.214193
Target:  5'- aGUCCGCCAcGCGCguggagucgaagGCCaGCGCCAGCu -3'
miRNA:   3'- gCGGGCGGUcCGUG------------CGGaCGCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 23731 0.73 0.214193
Target:  5'- gGCCCGCCcccgccgcccAGGC-CGCgUGCGgCGGCg -3'
miRNA:   3'- gCGGGCGG----------UCCGuGCGgACGCgGUUG- -5'
5762 3' -63.6 NC_001806.1 + 2232 0.73 0.214193
Target:  5'- gGCCCGCaCAgccGGUugGCCaggGCcGCCAGCa -3'
miRNA:   3'- gCGGGCG-GU---CCGugCGGa--CG-CGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.