miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5762 5' -58.8 NC_001806.1 + 9692 1.08 0.001786
Target:  5'- cACGCCCACACCGACAACCCCAGUGCAg -3'
miRNA:   3'- -UGCGGGUGUGGCUGUUGGGGUCACGU- -5'
5762 5' -58.8 NC_001806.1 + 39150 0.77 0.226202
Target:  5'- aGCGCCCGCAgacgcCCGACAgccccuuggaucGCCCCGGgGCGg -3'
miRNA:   3'- -UGCGGGUGU-----GGCUGU------------UGGGGUCaCGU- -5'
5762 5' -58.8 NC_001806.1 + 22952 0.76 0.24888
Target:  5'- cGCGCCgCACGCCGACGcGCCCCGccUGCGc -3'
miRNA:   3'- -UGCGG-GUGUGGCUGU-UGGGGUc-ACGU- -5'
5762 5' -58.8 NC_001806.1 + 56166 0.75 0.29983
Target:  5'- cCGCCCGC-CCGuuGACCCCGGaggGCAc -3'
miRNA:   3'- uGCGGGUGuGGCugUUGGGGUCa--CGU- -5'
5762 5' -58.8 NC_001806.1 + 113544 0.75 0.29983
Target:  5'- uGCGCCCugGcCCGGCucguGgUCCAGUGCAu -3'
miRNA:   3'- -UGCGGGugU-GGCUGu---UgGGGUCACGU- -5'
5762 5' -58.8 NC_001806.1 + 64962 0.74 0.33558
Target:  5'- gGCGCCCGgGCCGGgGGUCCCGGgGCAa -3'
miRNA:   3'- -UGCGGGUgUGGCUgUUGGGGUCaCGU- -5'
5762 5' -58.8 NC_001806.1 + 66748 0.74 0.343093
Target:  5'- cGCGCCCGgGCCcccCAGCCCCAGcucgGCGu -3'
miRNA:   3'- -UGCGGGUgUGGcu-GUUGGGGUCa---CGU- -5'
5762 5' -58.8 NC_001806.1 + 79678 0.74 0.350727
Target:  5'- cGCGCgCGCGCCGAC-ACCgCCGG-GCAc -3'
miRNA:   3'- -UGCGgGUGUGGCUGuUGG-GGUCaCGU- -5'
5762 5' -58.8 NC_001806.1 + 149355 0.73 0.399016
Target:  5'- cACGCCCcCAacaCGGCGACCCCGGUc-- -3'
miRNA:   3'- -UGCGGGuGUg--GCUGUUGGGGUCAcgu -5'
5762 5' -58.8 NC_001806.1 + 24731 0.73 0.402383
Target:  5'- uGCGCCCGCGCCcugcuggagcccgacGACGacGCCCCcccgcuGGUGCu -3'
miRNA:   3'- -UGCGGGUGUGG---------------CUGU--UGGGG------UCACGu -5'
5762 5' -58.8 NC_001806.1 + 53653 0.72 0.416031
Target:  5'- cGCGCCU-CA-CGGCAGCCCCAGcGCGu -3'
miRNA:   3'- -UGCGGGuGUgGCUGUUGGGGUCaCGU- -5'
5762 5' -58.8 NC_001806.1 + 22753 0.72 0.424703
Target:  5'- cACGCCgACGCCGACGACgacgCCGG-GCGc -3'
miRNA:   3'- -UGCGGgUGUGGCUGUUGg---GGUCaCGU- -5'
5762 5' -58.8 NC_001806.1 + 30218 0.72 0.442367
Target:  5'- cGCGCCCcCGCgCGGCcguGGCCCC-GUGCGu -3'
miRNA:   3'- -UGCGGGuGUG-GCUG---UUGGGGuCACGU- -5'
5762 5' -58.8 NC_001806.1 + 30309 0.72 0.442367
Target:  5'- cCGCCC-CGCgGACGcgcgccguguGCCCCAGUcGCAc -3'
miRNA:   3'- uGCGGGuGUGgCUGU----------UGGGGUCA-CGU- -5'
5762 5' -58.8 NC_001806.1 + 141196 0.71 0.468697
Target:  5'- -aGCCCcCACCGACAaaaACCCCGGacgucgaUGCc -3'
miRNA:   3'- ugCGGGuGUGGCUGU---UGGGGUC-------ACGu -5'
5762 5' -58.8 NC_001806.1 + 143955 0.71 0.476102
Target:  5'- cCGCCCACGCCcccgccccugccccGGCGACCCCcGgcccGCAc -3'
miRNA:   3'- uGCGGGUGUGG--------------CUGUUGGGGuCa---CGU- -5'
5762 5' -58.8 NC_001806.1 + 33334 0.71 0.478893
Target:  5'- uCGCCgACGCCccuuGGCcGCCCCGGcUGCAg -3'
miRNA:   3'- uGCGGgUGUGG----CUGuUGGGGUC-ACGU- -5'
5762 5' -58.8 NC_001806.1 + 100728 0.71 0.478893
Target:  5'- aGCGCcuCCACGCCGGgcGCCCaGGUGCGc -3'
miRNA:   3'- -UGCG--GGUGUGGCUguUGGGgUCACGU- -5'
5762 5' -58.8 NC_001806.1 + 49812 0.71 0.478893
Target:  5'- uCGCCUcCcCCGACAACCCCgcGGUGUu -3'
miRNA:   3'- uGCGGGuGuGGCUGUUGGGG--UCACGu -5'
5762 5' -58.8 NC_001806.1 + 132190 0.71 0.488256
Target:  5'- gGCGCgCCugGCggccauucgCGACAccCCCCAGUGCGc -3'
miRNA:   3'- -UGCG-GGugUG---------GCUGUu-GGGGUCACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.