miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5762 5' -58.8 NC_001806.1 + 1361 0.66 0.795158
Target:  5'- cCGCCCccaGCACCuccACGGCCCCcgccgccgccagcacGGUGCc -3'
miRNA:   3'- uGCGGG---UGUGGc--UGUUGGGG---------------UCACGu -5'
5762 5' -58.8 NC_001806.1 + 1549 0.66 0.771531
Target:  5'- -gGCCCGCgccaccgggccggGCCGGCGcgcaccgccucgcGCCCCAGcGCc -3'
miRNA:   3'- ugCGGGUG-------------UGGCUGU-------------UGGGGUCaCGu -5'
5762 5' -58.8 NC_001806.1 + 1729 0.67 0.716109
Target:  5'- cCGUCCAgCGCCGGCAGCacggCCCGGcgGUAc -3'
miRNA:   3'- uGCGGGU-GUGGCUGUUG----GGGUCa-CGU- -5'
5762 5' -58.8 NC_001806.1 + 2088 0.69 0.62606
Target:  5'- uCGCCgGCGCUGGCGagcaGCCCCAGa--- -3'
miRNA:   3'- uGCGGgUGUGGCUGU----UGGGGUCacgu -5'
5762 5' -58.8 NC_001806.1 + 2171 0.71 0.507233
Target:  5'- uGCGCCCAgCGCCGACAcgucggggGCgCCGGUcCAa -3'
miRNA:   3'- -UGCGGGU-GUGGCUGU--------UGgGGUCAcGU- -5'
5762 5' -58.8 NC_001806.1 + 2777 0.69 0.605895
Target:  5'- -gGCCUGCGCCGcgGCGGCCCgGG-GCGc -3'
miRNA:   3'- ugCGGGUGUGGC--UGUUGGGgUCaCGU- -5'
5762 5' -58.8 NC_001806.1 + 3009 0.67 0.72588
Target:  5'- cCGCCagCGCGUCGGCGGCgUCCGGUGCGc -3'
miRNA:   3'- uGCGG--GUGUGGCUGUUG-GGGUCACGU- -5'
5762 5' -58.8 NC_001806.1 + 3595 0.66 0.791583
Target:  5'- gGCGCCgUAC-CCGGCGGgcaccgcgcgcuCgCCCGGUGCGg -3'
miRNA:   3'- -UGCGG-GUGuGGCUGUU------------G-GGGUCACGU- -5'
5762 5' -58.8 NC_001806.1 + 3667 0.69 0.585806
Target:  5'- uGCGCCgGCGCCGgggcuccccGCGGCCCCcGUcaGCGc -3'
miRNA:   3'- -UGCGGgUGUGGC---------UGUUGGGGuCA--CGU- -5'
5762 5' -58.8 NC_001806.1 + 4153 0.7 0.525545
Target:  5'- uCGCCCAgGCCGccguacaGCAcccGCCCCGGggGCGg -3'
miRNA:   3'- uGCGGGUgUGGC-------UGU---UGGGGUCa-CGU- -5'
5762 5' -58.8 NC_001806.1 + 4484 0.67 0.735573
Target:  5'- gAC-CCCGC-CCGACGGCCCgCGccucgcGUGCGu -3'
miRNA:   3'- -UGcGGGUGuGGCUGUUGGG-GU------CACGU- -5'
5762 5' -58.8 NC_001806.1 + 4752 0.68 0.676414
Target:  5'- -gGCCCGguCGCCGGCGGCgUCGGcUGCGu -3'
miRNA:   3'- ugCGGGU--GUGGCUGUUGgGGUC-ACGU- -5'
5762 5' -58.8 NC_001806.1 + 5045 0.66 0.782547
Target:  5'- cGCGcCCCAC-CCGAgGGCCCCcc-GCu -3'
miRNA:   3'- -UGC-GGGUGuGGCUgUUGGGGucaCGu -5'
5762 5' -58.8 NC_001806.1 + 5585 0.69 0.585806
Target:  5'- gACGCCggCACGCCGGgGGCCCguGgccGCGg -3'
miRNA:   3'- -UGCGG--GUGUGGCUgUUGGGguCa--CGU- -5'
5762 5' -58.8 NC_001806.1 + 6050 0.66 0.77338
Target:  5'- gGCGCCgUGC-CCGACuccgcgccGGCCCCGGggGCGg -3'
miRNA:   3'- -UGCGG-GUGuGGCUG--------UUGGGGUCa-CGU- -5'
5762 5' -58.8 NC_001806.1 + 9294 0.69 0.585806
Target:  5'- gACGUCCACcucGCCGGCGGuCgCCCAGUucgGCGa -3'
miRNA:   3'- -UGCGGGUG---UGGCUGUU-G-GGGUCA---CGU- -5'
5762 5' -58.8 NC_001806.1 + 9692 1.08 0.001786
Target:  5'- cACGCCCACACCGACAACCCCAGUGCAg -3'
miRNA:   3'- -UGCGGGUGUGGCUGUUGGGGUCACGU- -5'
5762 5' -58.8 NC_001806.1 + 20030 0.71 0.516839
Target:  5'- cCGUCCGCuCCGACGGCCCUc-UGCGa -3'
miRNA:   3'- uGCGGGUGuGGCUGUUGGGGucACGU- -5'
5762 5' -58.8 NC_001806.1 + 20176 0.67 0.731705
Target:  5'- -gGCCCGCccccgggGCCGGCGcggagucgggcacgGCgCCAGUGCu -3'
miRNA:   3'- ugCGGGUG-------UGGCUGU--------------UGgGGUCACGu -5'
5762 5' -58.8 NC_001806.1 + 20720 0.67 0.751844
Target:  5'- -gGCCCGCcgggggggcgggggGCCGGCGGCCuCCGcUGCu -3'
miRNA:   3'- ugCGGGUG--------------UGGCUGUUGG-GGUcACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.