miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5763 3' -60.2 NC_001806.1 + 9308 1.12 0.000914
Target:  5'- cGGCGGUCGCCCAGUUCGGCGACCGACg -3'
miRNA:   3'- -CCGCCAGCGGGUCAAGCCGCUGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 33780 0.81 0.127005
Target:  5'- cGGCGGcCGCCguGUUCGGUcucgguagccGGCCGGCg -3'
miRNA:   3'- -CCGCCaGCGGguCAAGCCG----------CUGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 3606 0.8 0.136854
Target:  5'- cGGCGGgcaccgcgcgcUCGCCCGGUgCGGCGGCggCGACg -3'
miRNA:   3'- -CCGCC-----------AGCGGGUCAaGCCGCUG--GCUG- -5'
5763 3' -60.2 NC_001806.1 + 57010 0.77 0.217004
Target:  5'- aGGCGG-CGCCCAGUgccaggcacUgGGUGGCCGGg -3'
miRNA:   3'- -CCGCCaGCGGGUCA---------AgCCGCUGGCUg -5'
5763 3' -60.2 NC_001806.1 + 84861 0.76 0.243934
Target:  5'- cGGCGGUCGCgCuccUCuGCGGCCGGCg -3'
miRNA:   3'- -CCGCCAGCGgGucaAGcCGCUGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 42638 0.76 0.255461
Target:  5'- cGGCGGcgucgCGUCCGGUgCGGgGGCUGGCg -3'
miRNA:   3'- -CCGCCa----GCGGGUCAaGCCgCUGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 95311 0.75 0.267432
Target:  5'- cGGCGGacgCGCCCaAGggCGGCGcgggccCCGACg -3'
miRNA:   3'- -CCGCCa--GCGGG-UCaaGCCGCu-----GGCUG- -5'
5763 3' -60.2 NC_001806.1 + 61959 0.75 0.302009
Target:  5'- cGGagaGGcCGCCCAGguuUuccguaaccaggucgUCGGCGGCCGACa -3'
miRNA:   3'- -CCg--CCaGCGGGUC---A---------------AGCCGCUGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 3139 0.74 0.326917
Target:  5'- cGCGGg-GCCCAGggcccCGGCGACCaGGCu -3'
miRNA:   3'- cCGCCagCGGGUCaa---GCCGCUGG-CUG- -5'
5763 3' -60.2 NC_001806.1 + 23311 0.74 0.334101
Target:  5'- cGGCccGGcCGCCCGGaggCGGCGGCCcGCg -3'
miRNA:   3'- -CCG--CCaGCGGGUCaa-GCCGCUGGcUG- -5'
5763 3' -60.2 NC_001806.1 + 76639 0.73 0.371735
Target:  5'- aGGUGGUCGCCgucc-CGGCGACCGu- -3'
miRNA:   3'- -CCGCCAGCGGgucaaGCCGCUGGCug -5'
5763 3' -60.2 NC_001806.1 + 120343 0.73 0.3796
Target:  5'- cGGCgGGUCGUCCcGcUCGGCGAC-GACc -3'
miRNA:   3'- -CCG-CCAGCGGGuCaAGCCGCUGgCUG- -5'
5763 3' -60.2 NC_001806.1 + 55508 0.72 0.393225
Target:  5'- cGGCGGUCGCaCCacacgggcccggggGGUUUaguggGGCGGCCcGACu -3'
miRNA:   3'- -CCGCCAGCG-GG--------------UCAAG-----CCGCUGG-CUG- -5'
5763 3' -60.2 NC_001806.1 + 150995 0.72 0.395662
Target:  5'- cGCGG-CGCgCCAGgcgGGCGGCCGAg -3'
miRNA:   3'- cCGCCaGCG-GGUCaagCCGCUGGCUg -5'
5763 3' -60.2 NC_001806.1 + 4443 0.72 0.395662
Target:  5'- gGGCGGcgucCGCCCGGg--GGCuGCCGGCg -3'
miRNA:   3'- -CCGCCa---GCGGGUCaagCCGcUGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 3480 0.72 0.403856
Target:  5'- cGCGG-CGCCCGGcgucgucgUCGGCG-UCGGCg -3'
miRNA:   3'- cCGCCaGCGGGUCa-------AGCCGCuGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 27280 0.72 0.42056
Target:  5'- cGGCGGcCG-CCAGcgCGGCGGggcCCGGCc -3'
miRNA:   3'- -CCGCCaGCgGGUCaaGCCGCU---GGCUG- -5'
5763 3' -60.2 NC_001806.1 + 21773 0.72 0.429067
Target:  5'- gGGCGGggucCGUCgAGcgCGGCG-CCGGCa -3'
miRNA:   3'- -CCGCCa---GCGGgUCaaGCCGCuGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 102582 0.72 0.429067
Target:  5'- cGCGGUCGCUaucgUCGGCGGCCc-- -3'
miRNA:   3'- cCGCCAGCGGgucaAGCCGCUGGcug -5'
5763 3' -60.2 NC_001806.1 + 4817 0.72 0.437676
Target:  5'- aGGCGGggGUCCGGggCGGCGagGCCG-Cg -3'
miRNA:   3'- -CCGCCagCGGGUCaaGCCGC--UGGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.