miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5763 3' -60.2 NC_001806.1 + 53 0.66 0.76049
Target:  5'- uGGgGGggGCCCGuuUUCGGCGuCUGGCc -3'
miRNA:   3'- -CCgCCagCGGGUc-AAGCCGCuGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 1418 0.66 0.77679
Target:  5'- uGGCcGagGCCCAGcgaaucccgggCGGCG-CCGGCg -3'
miRNA:   3'- -CCGcCagCGGGUCaa---------GCCGCuGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 1615 0.66 0.764144
Target:  5'- aGCGGcgCGCCCAGgcCccagcgcgcgcaggcGGCGugCGAg -3'
miRNA:   3'- cCGCCa-GCGGGUCaaG---------------CCGCugGCUg -5'
5763 3' -60.2 NC_001806.1 + 2521 0.71 0.491289
Target:  5'- cGGCGGgggcggGCCCGGcgcaccgcgCGGCGAUCGAg -3'
miRNA:   3'- -CCGCCag----CGGGUCaa-------GCCGCUGGCUg -5'
5763 3' -60.2 NC_001806.1 + 2640 0.67 0.713575
Target:  5'- cGCGGggaGCaguaggccuCCAGggCGGCGGCCG-Cg -3'
miRNA:   3'- cCGCCag-CG---------GGUCaaGCCGCUGGCuG- -5'
5763 3' -60.2 NC_001806.1 + 2724 0.7 0.509834
Target:  5'- aGGgGGUCgggGCCC---UCGGCGgGCCGGCg -3'
miRNA:   3'- -CCgCCAG---CGGGucaAGCCGC-UGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 3021 0.69 0.60609
Target:  5'- cGGCGG-CGUCCGGUgcgcUGGCcGCCGcCg -3'
miRNA:   3'- -CCGCCaGCGGGUCAa---GCCGcUGGCuG- -5'
5763 3' -60.2 NC_001806.1 + 3139 0.74 0.326917
Target:  5'- cGCGGg-GCCCAGggcccCGGCGACCaGGCu -3'
miRNA:   3'- cCGCCagCGGGUCaa---GCCGCUGG-CUG- -5'
5763 3' -60.2 NC_001806.1 + 3287 0.69 0.60609
Target:  5'- aGGCGGggCGCg----UCGGCGugCGGCg -3'
miRNA:   3'- -CCGCCa-GCGggucaAGCCGCugGCUG- -5'
5763 3' -60.2 NC_001806.1 + 3480 0.72 0.403856
Target:  5'- cGCGG-CGCCCGGcgucgucgUCGGCG-UCGGCg -3'
miRNA:   3'- cCGCCaGCGGGUCa-------AGCCGCuGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 3558 0.67 0.683618
Target:  5'- cGGCGGacagcCGcCCCAGggCGGCGAggaucccCgCGGCg -3'
miRNA:   3'- -CCGCCa----GC-GGGUCaaGCCGCU-------G-GCUG- -5'
5763 3' -60.2 NC_001806.1 + 3606 0.8 0.136854
Target:  5'- cGGCGGgcaccgcgcgcUCGCCCGGUgCGGCGGCggCGACg -3'
miRNA:   3'- -CCGCC-----------AGCGGGUCAaGCCGCUG--GCUG- -5'
5763 3' -60.2 NC_001806.1 + 4046 0.71 0.491289
Target:  5'- cGGC-GUCGCCCAGcUCGGgcgcccacaCGGCCGcCg -3'
miRNA:   3'- -CCGcCAGCGGGUCaAGCC---------GCUGGCuG- -5'
5763 3' -60.2 NC_001806.1 + 4443 0.72 0.395662
Target:  5'- gGGCGGcgucCGCCCGGg--GGCuGCCGGCg -3'
miRNA:   3'- -CCGCCa---GCGGGUCaagCCGcUGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 4745 0.67 0.684591
Target:  5'- gGGcCGGg-GCCCGGUcgcCGGCGGCguCGGCu -3'
miRNA:   3'- -CC-GCCagCGGGUCAa--GCCGCUG--GCUG- -5'
5763 3' -60.2 NC_001806.1 + 4817 0.72 0.437676
Target:  5'- aGGCGGggGUCCGGggCGGCGagGCCG-Cg -3'
miRNA:   3'- -CCGCCagCGGGUCaaGCCGC--UGGCuG- -5'
5763 3' -60.2 NC_001806.1 + 5074 0.67 0.694303
Target:  5'- cGCGGUCuggGCUCGGggugggCGGCGGCCc-- -3'
miRNA:   3'- cCGCCAG---CGGGUCaa----GCCGCUGGcug -5'
5763 3' -60.2 NC_001806.1 + 5941 0.66 0.732591
Target:  5'- gGGCGGgacCGCCCcaagGGggCGG-GGCCGcCg -3'
miRNA:   3'- -CCGCCa--GCGGG----UCaaGCCgCUGGCuG- -5'
5763 3' -60.2 NC_001806.1 + 6081 0.67 0.703003
Target:  5'- gGGCGG--GCCCGGg-CGGCGGggggcgggucucuCCGGCg -3'
miRNA:   3'- -CCGCCagCGGGUCaaGCCGCU-------------GGCUG- -5'
5763 3' -60.2 NC_001806.1 + 9308 1.12 0.000914
Target:  5'- cGGCGGUCGCCCAGUUCGGCGACCGACg -3'
miRNA:   3'- -CCGCCAGCGGGUCAAGCCGCUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.