miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5763 5' -54.7 NC_001806.1 + 9345 1.13 0.002384
Target:  5'- gGGAUGGGGCGCCUUACCAGAAGACGGa -3'
miRNA:   3'- -CCUACCCCGCGGAAUGGUCUUCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 151278 0.83 0.212468
Target:  5'- cGGUGGGG-GCCgggGCCGGggGGCGGc -3'
miRNA:   3'- cCUACCCCgCGGaa-UGGUCuuCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 21208 0.8 0.296883
Target:  5'- cGGGUGGGGCGCggagACggaGGAGGGCGGg -3'
miRNA:   3'- -CCUACCCCGCGgaa-UGg--UCUUCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 29182 0.77 0.44033
Target:  5'- uGcgGGGGCGCCcccccuCgAGAGGACGGg -3'
miRNA:   3'- cCuaCCCCGCGGaau---GgUCUUCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 25017 0.76 0.505807
Target:  5'- gGGgcGGGGCGCUUgugagACCcGAAGACGc -3'
miRNA:   3'- -CCuaCCCCGCGGAa----UGGuCUUCUGCc -5'
5763 5' -54.7 NC_001806.1 + 135248 0.75 0.51551
Target:  5'- uGAUGGGcGCGCCUacCCGGggGGCc- -3'
miRNA:   3'- cCUACCC-CGCGGAauGGUCuuCUGcc -5'
5763 5' -54.7 NC_001806.1 + 37765 0.75 0.535136
Target:  5'- cGGcgGcGGGCGCCUUucgcuccgggGCCGGGGcGCGGg -3'
miRNA:   3'- -CCuaC-CCCGCGGAA----------UGGUCUUcUGCC- -5'
5763 5' -54.7 NC_001806.1 + 133079 0.75 0.542067
Target:  5'- uGGGUGGGGUaauggccgccgucuGCCUgcagAUCgAGGAGACGGc -3'
miRNA:   3'- -CCUACCCCG--------------CGGAa---UGG-UCUUCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 57648 0.75 0.545047
Target:  5'- gGGGuuUGGGG-GCCcccCCGGAAGGCGGa -3'
miRNA:   3'- -CCU--ACCCCgCGGaauGGUCUUCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 2796 0.75 0.555017
Target:  5'- ---cGGGGCGCCgcggGCUGGGcggGGGCGGg -3'
miRNA:   3'- ccuaCCCCGCGGaa--UGGUCU---UCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 6773 0.75 0.555017
Target:  5'- ---gGGGGCGUgaggACCGGGAGGCGGc -3'
miRNA:   3'- ccuaCCCCGCGgaa-UGGUCUUCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 10368 0.74 0.56504
Target:  5'- ---gGGGGCGCUggGCCaagaccucgGGggGGCGGg -3'
miRNA:   3'- ccuaCCCCGCGGaaUGG---------UCuuCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 28202 0.74 0.595363
Target:  5'- --cUGGGGCGCCaUAUUGGggGGCGc -3'
miRNA:   3'- ccuACCCCGCGGaAUGGUCuuCUGCc -5'
5763 5' -54.7 NC_001806.1 + 48726 0.74 0.605533
Target:  5'- uGGUGGGG-GaaagaaCUaGCCAGGAGACGGg -3'
miRNA:   3'- cCUACCCCgCg-----GAaUGGUCUUCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 109544 0.73 0.622864
Target:  5'- cGGggGaGGuGCGCCUggGCCAGGgcgaacacguauggGGACGGg -3'
miRNA:   3'- -CCuaC-CC-CGCGGAa-UGGUCU--------------UCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 28375 0.73 0.636132
Target:  5'- gGGAccgGGGGCGCCaUGuuAGggGguGCGGa -3'
miRNA:   3'- -CCUa--CCCCGCGGaAUggUCuuC--UGCC- -5'
5763 5' -54.7 NC_001806.1 + 28326 0.73 0.646336
Target:  5'- --uUGGGGCGCCaUGuuAGggGGCGu -3'
miRNA:   3'- ccuACCCCGCGGaAUggUCuuCUGCc -5'
5763 5' -54.7 NC_001806.1 + 49986 0.72 0.676848
Target:  5'- cGGGUGGGugugcgggacGCGCCUUcACgCGGAGGcgcGCGGg -3'
miRNA:   3'- -CCUACCC----------CGCGGAA-UG-GUCUUC---UGCC- -5'
5763 5' -54.7 NC_001806.1 + 147776 0.72 0.686956
Target:  5'- cGGAcgcGGGGgGCCcggGgCGGggGGCGGa -3'
miRNA:   3'- -CCUa--CCCCgCGGaa-UgGUCuuCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 27829 0.72 0.70703
Target:  5'- ---gGGGGCGCCggguuggucCCcGggGACGGg -3'
miRNA:   3'- ccuaCCCCGCGGaau------GGuCuuCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.