miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5763 5' -54.7 NC_001806.1 + 2579 0.68 0.882158
Target:  5'- -cAUGaGGGCcgGUC--GCCAGggGACGGg -3'
miRNA:   3'- ccUAC-CCCG--CGGaaUGGUCuuCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 2796 0.75 0.555017
Target:  5'- ---cGGGGCGCCgcggGCUGGGcggGGGCGGg -3'
miRNA:   3'- ccuaCCCCGCGGaa--UGGUCU---UCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 2842 0.69 0.852477
Target:  5'- uGGAggGGGGCGCgggcGCgGGGAGGgGGg -3'
miRNA:   3'- -CCUa-CCCCGCGgaa-UGgUCUUCUgCC- -5'
5763 5' -54.7 NC_001806.1 + 4124 0.66 0.957297
Target:  5'- ----cGGGCGCCcc-CCAGAggcccGGGCGGc -3'
miRNA:   3'- ccuacCCCGCGGaauGGUCU-----UCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 4185 0.66 0.945066
Target:  5'- gGGcgGGGGC-CCggcGCCGGGccACGGc -3'
miRNA:   3'- -CCuaCCCCGcGGaa-UGGUCUucUGCC- -5'
5763 5' -54.7 NC_001806.1 + 4288 0.66 0.945066
Target:  5'- ---cGGGGCuGCCcgGCCGuGAAG-CGGc -3'
miRNA:   3'- ccuaCCCCG-CGGaaUGGU-CUUCuGCC- -5'
5763 5' -54.7 NC_001806.1 + 4822 0.68 0.889038
Target:  5'- gGGGUccGGGGCGgCgagGCCGcGggGuCGGg -3'
miRNA:   3'- -CCUA--CCCCGCgGaa-UGGU-CuuCuGCC- -5'
5763 5' -54.7 NC_001806.1 + 6078 0.67 0.935751
Target:  5'- cGGggGcGGGC-CCggGCggCGGggGGCGGg -3'
miRNA:   3'- -CCuaC-CCCGcGGaaUG--GUCuuCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 6773 0.75 0.555017
Target:  5'- ---gGGGGCGUgaggACCGGGAGGCGGc -3'
miRNA:   3'- ccuaCCCCGCGgaa-UGGUCUUCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 9137 0.69 0.867738
Target:  5'- gGGAgGGGGCGUCgacaGCCuGGAGGGCc- -3'
miRNA:   3'- -CCUaCCCCGCGGaa--UGG-UCUUCUGcc -5'
5763 5' -54.7 NC_001806.1 + 9345 1.13 0.002384
Target:  5'- gGGAUGGGGCGCCUUACCAGAAGACGGa -3'
miRNA:   3'- -CCUACCCCGCGGAAUGGUCUUCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 10368 0.74 0.56504
Target:  5'- ---gGGGGCGCUggGCCaagaccucgGGggGGCGGg -3'
miRNA:   3'- ccuaCCCCGCGGaaUGG---------UCuuCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 10695 0.66 0.944623
Target:  5'- aGAUGGGGCcgggggggcguacGCCaucGCCAGcGGGACcGGa -3'
miRNA:   3'- cCUACCCCG-------------CGGaa-UGGUC-UUCUG-CC- -5'
5763 5' -54.7 NC_001806.1 + 12833 0.67 0.929189
Target:  5'- gGGAUGGuaaggcgucgcGGCGuCCUggaucgacgguaugUGCCAGuuuGGugGGa -3'
miRNA:   3'- -CCUACC-----------CCGC-GGA--------------AUGGUCu--UCugCC- -5'
5763 5' -54.7 NC_001806.1 + 13634 0.66 0.949373
Target:  5'- uGGAUGuGGuacacGCGCCggacccCCGGAGGGuCGGu -3'
miRNA:   3'- -CCUAC-CC-----CGCGGaau---GGUCUUCU-GCC- -5'
5763 5' -54.7 NC_001806.1 + 15023 0.68 0.900854
Target:  5'- gGGucGUGGGGCGagUUGCCAGcggcccgauaauGGugGGg -3'
miRNA:   3'- -CC--UACCCCGCggAAUGGUCu-----------UCugCC- -5'
5763 5' -54.7 NC_001806.1 + 15086 0.67 0.934273
Target:  5'- ---cGGGGCGCgCgggggaguuguugggAUCGGggGAUGGg -3'
miRNA:   3'- ccuaCCCCGCG-Gaa-------------UGGUCuuCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 20714 0.66 0.953449
Target:  5'- gGGGUGGGccCGCCg----GGggGGCGGg -3'
miRNA:   3'- -CCUACCCc-GCGGaauggUCuuCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 21208 0.8 0.296883
Target:  5'- cGGGUGGGGCGCggagACggaGGAGGGCGGg -3'
miRNA:   3'- -CCUACCCCGCGgaa-UGg--UCUUCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 23945 0.68 0.904627
Target:  5'- cGGGgccugGGGGgGCC--GCCGGAGugguccgccgagcgcGGCGGg -3'
miRNA:   3'- -CCUa----CCCCgCGGaaUGGUCUU---------------CUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.