miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5765 3' -57.9 NC_001806.1 + 7850 1.11 0.001655
Target:  5'- cUCCGGGCCAACCAAGAGACGUCGCCCc -3'
miRNA:   3'- -AGGCCCGGUUGGUUCUCUGCAGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 81344 0.84 0.10628
Target:  5'- -gCGGGCCGcaACCAGGcggccgGGGCGUCGCCCg -3'
miRNA:   3'- agGCCCGGU--UGGUUC------UCUGCAGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 144616 0.83 0.117752
Target:  5'- gCCGGGgCGGCCAAGGGGCGUCGgCg -3'
miRNA:   3'- aGGCCCgGUUGGUUCUCUGCAGCgGg -5'
5765 3' -57.9 NC_001806.1 + 116937 0.79 0.213922
Target:  5'- -gCGGGCCAACUAGGAGACaccuUgGCCCu -3'
miRNA:   3'- agGCCCGGUUGGUUCUCUGc---AgCGGG- -5'
5765 3' -57.9 NC_001806.1 + 21592 0.78 0.235378
Target:  5'- gCCGGcCCAGCCGccgcGGAGACGUCGUCa -3'
miRNA:   3'- aGGCCcGGUUGGU----UCUCUGCAGCGGg -5'
5765 3' -57.9 NC_001806.1 + 114512 0.78 0.258611
Target:  5'- gCCgGGGCCGACCAcGuGGCGaacgCGCCCa -3'
miRNA:   3'- aGG-CCCGGUUGGUuCuCUGCa---GCGGG- -5'
5765 3' -57.9 NC_001806.1 + 21145 0.76 0.317677
Target:  5'- cCCGGGCCccACCGAcGGGcCGcCGCCCa -3'
miRNA:   3'- aGGCCCGGu-UGGUU-CUCuGCaGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 12765 0.76 0.324833
Target:  5'- aCCaGGGCU-GCCAGGAGACuGcCGCCCa -3'
miRNA:   3'- aGG-CCCGGuUGGUUCUCUG-CaGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 112330 0.76 0.324833
Target:  5'- -gCGGGCCAccGCCGGGAGGcCGUCgagGCCUg -3'
miRNA:   3'- agGCCCGGU--UGGUUCUCU-GCAG---CGGG- -5'
5765 3' -57.9 NC_001806.1 + 31304 0.76 0.339502
Target:  5'- gUCCGGG--GAgCAGGGGGCGUCGaCCCg -3'
miRNA:   3'- -AGGCCCggUUgGUUCUCUGCAGC-GGG- -5'
5765 3' -57.9 NC_001806.1 + 1462 0.75 0.360058
Target:  5'- cCCGGGCCGucgucgucGCCGcgcagcaccagcggGGGGGCGUCGUCg -3'
miRNA:   3'- aGGCCCGGU--------UGGU--------------UCUCUGCAGCGGg -5'
5765 3' -57.9 NC_001806.1 + 68692 0.75 0.386337
Target:  5'- aUCGaGGCCcuUgGGGAGACGUCGCUCa -3'
miRNA:   3'- aGGC-CCGGuuGgUUCUCUGCAGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 110919 0.74 0.419841
Target:  5'- -aCGGGCUGACCGgaAGGGugGUgGCgCCg -3'
miRNA:   3'- agGCCCGGUUGGU--UCUCugCAgCG-GG- -5'
5765 3' -57.9 NC_001806.1 + 70981 0.74 0.419841
Target:  5'- gCCGcGGCCAuCCGAGAGguaaugGCGcaugCGCCCg -3'
miRNA:   3'- aGGC-CCGGUuGGUUCUC------UGCa---GCGGG- -5'
5765 3' -57.9 NC_001806.1 + 108914 0.74 0.428488
Target:  5'- aCUGGGUCGucggGCCGAGGGACGUacagGCCg -3'
miRNA:   3'- aGGCCCGGU----UGGUUCUCUGCAg---CGGg -5'
5765 3' -57.9 NC_001806.1 + 54613 0.74 0.428488
Target:  5'- aCCGGaccguaGCCAGCCcGGGGugGUCGCa- -3'
miRNA:   3'- aGGCC------CGGUUGGuUCUCugCAGCGgg -5'
5765 3' -57.9 NC_001806.1 + 68393 0.74 0.437239
Target:  5'- aCCGGGCCcacgGGCUuccGGAGACGgCGCUCu -3'
miRNA:   3'- aGGCCCGG----UUGGu--UCUCUGCaGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 94628 0.74 0.437239
Target:  5'- ---cGGCgAACCAGGGGGCGacgaUCGCCCg -3'
miRNA:   3'- aggcCCGgUUGGUUCUCUGC----AGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 108049 0.74 0.437239
Target:  5'- gCCGGGCCGACgGAG-GGCG-C-CCCa -3'
miRNA:   3'- aGGCCCGGUUGgUUCuCUGCaGcGGG- -5'
5765 3' -57.9 NC_001806.1 + 23309 0.73 0.446092
Target:  5'- cCCGGcCCGGCCGcccGGAGGCGgcgGCCCg -3'
miRNA:   3'- aGGCCcGGUUGGU---UCUCUGCag-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.