miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5765 3' -57.9 NC_001806.1 + 1462 0.75 0.360058
Target:  5'- cCCGGGCCGucgucgucGCCGcgcagcaccagcggGGGGGCGUCGUCg -3'
miRNA:   3'- aGGCCCGGU--------UGGU--------------UCUCUGCAGCGGg -5'
5765 3' -57.9 NC_001806.1 + 2318 0.66 0.865974
Target:  5'- cCCGccGCCGGCCAGGu--CcUCGCCCg -3'
miRNA:   3'- aGGCc-CGGUUGGUUCucuGcAGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 2422 0.66 0.856279
Target:  5'- -gCGGGCCcgaggcgcgcagggGGCCaAAGAGGCG--GCCCc -3'
miRNA:   3'- agGCCCGG--------------UUGG-UUCUCUGCagCGGG- -5'
5765 3' -57.9 NC_001806.1 + 2583 0.68 0.76541
Target:  5'- --aGGGCCGgucGCCAGGGGACGgggaacagcgggUgGUCCg -3'
miRNA:   3'- aggCCCGGU---UGGUUCUCUGC------------AgCGGG- -5'
5765 3' -57.9 NC_001806.1 + 2947 0.73 0.473234
Target:  5'- gCCGGGCCgGGCCGGGAcucuuGCGcuugCGCCCc -3'
miRNA:   3'- aGGCCCGG-UUGGUUCUc----UGCa---GCGGG- -5'
5765 3' -57.9 NC_001806.1 + 3363 0.73 0.455044
Target:  5'- gCCGGGCCccGGCCAGccccGGGACGgcCGCCa -3'
miRNA:   3'- aGGCCCGG--UUGGUU----CUCUGCa-GCGGg -5'
5765 3' -57.9 NC_001806.1 + 3464 0.7 0.63867
Target:  5'- -aCGcGGCCGGCCuGGGcGCGgCGCCCg -3'
miRNA:   3'- agGC-CCGGUUGGuUCUcUGCaGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 3829 0.67 0.792625
Target:  5'- gCCGaagcGGCCGGCCGccauGGCGUaGCCCa -3'
miRNA:   3'- aGGC----CCGGUUGGUucu-CUGCAgCGGG- -5'
5765 3' -57.9 NC_001806.1 + 4002 0.7 0.621656
Target:  5'- gUCCGGGgUguacagcagccgcguGAUCAGGGcguacugcugcgcGGCGUCGCCCa -3'
miRNA:   3'- -AGGCCCgG---------------UUGGUUCU-------------CUGCAGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 4078 0.71 0.598679
Target:  5'- gCCGGGgCGcCCGAGGccucgaaccGGCGUCGCgCCu -3'
miRNA:   3'- aGGCCCgGUuGGUUCU---------CUGCAGCG-GG- -5'
5765 3' -57.9 NC_001806.1 + 4122 0.68 0.76541
Target:  5'- cUCGGGCgCccCCcAGAGGCccgggcggcuGUCGCCCa -3'
miRNA:   3'- aGGCCCG-GuuGGuUCUCUG----------CAGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 4404 0.67 0.78368
Target:  5'- cUUGGGCgCGGCCucggagAGGGGGgGUgGCCCg -3'
miRNA:   3'- aGGCCCG-GUUGG------UUCUCUgCAgCGGG- -5'
5765 3' -57.9 NC_001806.1 + 4742 0.68 0.727578
Target:  5'- cCCGGGCCGgggcccggucGCC-GGcGGCGUCGgCUg -3'
miRNA:   3'- aGGCCCGGU----------UGGuUCuCUGCAGCgGG- -5'
5765 3' -57.9 NC_001806.1 + 5868 0.68 0.76541
Target:  5'- gCCGGacGCCGggACCAAcGGGACGgcgggCgGCCCa -3'
miRNA:   3'- aGGCC--CGGU--UGGUU-CUCUGCa----G-CGGG- -5'
5765 3' -57.9 NC_001806.1 + 6064 0.72 0.501182
Target:  5'- cUCCGcGCCGGCCccGGGGGCGg-GCCCg -3'
miRNA:   3'- -AGGCcCGGUUGGu-UCUCUGCagCGGG- -5'
5765 3' -57.9 NC_001806.1 + 7686 0.72 0.529832
Target:  5'- cCCGGGCgCuugcgcACCuGGuGAUGUUGCCCg -3'
miRNA:   3'- aGGCCCG-Gu-----UGGuUCuCUGCAGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 7850 1.11 0.001655
Target:  5'- cUCCGGGCCAACCAAGAGACGUCGCCCc -3'
miRNA:   3'- -AGGCCCGGUUGGUUCUCUGCAGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 9110 0.72 0.524052
Target:  5'- aCCGagcGGCCAGCCAggcgacaaacagggaGGGGGCGUCgacaGCCUg -3'
miRNA:   3'- aGGC---CCGGUUGGU---------------UCUCUGCAG----CGGG- -5'
5765 3' -57.9 NC_001806.1 + 9532 0.72 0.51066
Target:  5'- cUCCggggGGGCCAGCCAcGGGACcugGUCGCg- -3'
miRNA:   3'- -AGG----CCCGGUUGGUuCUCUG---CAGCGgg -5'
5765 3' -57.9 NC_001806.1 + 10374 0.68 0.745739
Target:  5'- gCUGGGCCAagACCucgggggggcgggGGGAGGCGggaGCCg -3'
miRNA:   3'- aGGCCCGGU--UGG-------------UUCUCUGCag-CGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.