miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5765 5' -49.2 NC_001806.1 + 7887 1.11 0.009556
Target:  5'- gGCGGACGGCGGCCAUUAACUUUAUCAc -3'
miRNA:   3'- -CGCCUGCCGCCGGUAAUUGAAAUAGU- -5'
5765 5' -49.2 NC_001806.1 + 29464 0.78 0.681458
Target:  5'- -aGGGCGGgcaCGGCCGUgGACUUUAUCu -3'
miRNA:   3'- cgCCUGCC---GCCGGUAaUUGAAAUAGu -5'
5765 5' -49.2 NC_001806.1 + 2998 0.74 0.871175
Target:  5'- gGCGG-CGGCGGCCGccAGCgc-GUCGg -3'
miRNA:   3'- -CGCCuGCCGCCGGUaaUUGaaaUAGU- -5'
5765 5' -49.2 NC_001806.1 + 86087 0.73 0.893176
Target:  5'- cGCGGAgGGCGGCCAgccGCgcgaccGUCu -3'
miRNA:   3'- -CGCCUgCCGCCGGUaauUGaaa---UAGu -5'
5765 5' -49.2 NC_001806.1 + 2661 0.72 0.930332
Target:  5'- -aGGGCGGCGGCCGcgGGCg------ -3'
miRNA:   3'- cgCCUGCCGCCGGUaaUUGaaauagu -5'
5765 5' -49.2 NC_001806.1 + 33772 0.72 0.935611
Target:  5'- gGCGGcuGCGGCGGCCGccGugUUcgGUCu -3'
miRNA:   3'- -CGCC--UGCCGCCGGUaaUugAAa-UAGu -5'
5765 5' -49.2 NC_001806.1 + 3091 0.72 0.935611
Target:  5'- cGCGGcgGCGGCGGCCGcggAGCUcgg-CAg -3'
miRNA:   3'- -CGCC--UGCCGCCGGUaa-UUGAaauaGU- -5'
5765 5' -49.2 NC_001806.1 + 55016 0.71 0.953719
Target:  5'- cGCGGguaguagGCGGCGGCCGUgcAC---GUCGc -3'
miRNA:   3'- -CGCC-------UGCCGCCGGUAauUGaaaUAGU- -5'
5765 5' -49.2 NC_001806.1 + 25905 0.71 0.958128
Target:  5'- gGCGGGCGGCGGUCcg-GGCg------ -3'
miRNA:   3'- -CGCCUGCCGCCGGuaaUUGaaauagu -5'
5765 5' -49.2 NC_001806.1 + 76310 0.71 0.960779
Target:  5'- cGCGGugcgcaacgacccgGCGGCGGCCGccgAGCU-UGUCc -3'
miRNA:   3'- -CGCC--------------UGCCGCCGGUaa-UUGAaAUAGu -5'
5765 5' -49.2 NC_001806.1 + 53858 0.7 0.971718
Target:  5'- cGUGcGACGGCGGCCAgcuguUUGGCa------ -3'
miRNA:   3'- -CGC-CUGCCGCCGGU-----AAUUGaaauagu -5'
5765 5' -49.2 NC_001806.1 + 27887 0.7 0.971718
Target:  5'- -gGGACGcGCGGCCAUUGGgggaAUCGu -3'
miRNA:   3'- cgCCUGC-CGCCGGUAAUUgaaaUAGU- -5'
5765 5' -49.2 NC_001806.1 + 24538 0.7 0.974549
Target:  5'- cCGGGCGGCGGCCucgggGACc------ -3'
miRNA:   3'- cGCCUGCCGCCGGuaa--UUGaaauagu -5'
5765 5' -49.2 NC_001806.1 + 86385 0.7 0.976404
Target:  5'- cGCGGggcgcucggcuaacGCGGCGGCCGcuccggaGACggUAUCGu -3'
miRNA:   3'- -CGCC--------------UGCCGCCGGUaa-----UUGaaAUAGU- -5'
5765 5' -49.2 NC_001806.1 + 101939 0.7 0.977168
Target:  5'- -aGGGCGGCcaGGCCGggaaacAGCUggGUCAg -3'
miRNA:   3'- cgCCUGCCG--CCGGUaa----UUGAaaUAGU- -5'
5765 5' -49.2 NC_001806.1 + 23213 0.69 0.981802
Target:  5'- gGCGG-CGGCGGCCAgc-GCa------ -3'
miRNA:   3'- -CGCCuGCCGCCGGUaauUGaaauagu -5'
5765 5' -49.2 NC_001806.1 + 21625 0.69 0.983836
Target:  5'- cCGG-UGGCGGCCAUcGGCgucAUCGa -3'
miRNA:   3'- cGCCuGCCGCCGGUAaUUGaaaUAGU- -5'
5765 5' -49.2 NC_001806.1 + 123919 0.69 0.983836
Target:  5'- cCGGuACGGCGGCCA--AACUg----- -3'
miRNA:   3'- cGCC-UGCCGCCGGUaaUUGAaauagu -5'
5765 5' -49.2 NC_001806.1 + 147217 0.69 0.985693
Target:  5'- gGCGGAagaGGCGGCCccc-GCggggGUCGg -3'
miRNA:   3'- -CGCCUg--CCGCCGGuaauUGaaa-UAGU- -5'
5765 5' -49.2 NC_001806.1 + 52131 0.69 0.985693
Target:  5'- -aGGGCGGCGGUCAgcGACg------ -3'
miRNA:   3'- cgCCUGCCGCCGGUaaUUGaaauagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.