Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5765 | 5' | -49.2 | NC_001806.1 | + | 2661 | 0.72 | 0.930332 |
Target: 5'- -aGGGCGGCGGCCGcgGGCg------ -3' miRNA: 3'- cgCCUGCCGCCGGUaaUUGaaauagu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 2998 | 0.74 | 0.871175 |
Target: 5'- gGCGG-CGGCGGCCGccAGCgc-GUCGg -3' miRNA: 3'- -CGCCuGCCGCCGGUaaUUGaaaUAGU- -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 3091 | 0.72 | 0.935611 |
Target: 5'- cGCGGcgGCGGCGGCCGcggAGCUcgg-CAg -3' miRNA: 3'- -CGCC--UGCCGCCGGUaa-UUGAaauaGU- -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 3181 | 0.67 | 0.997127 |
Target: 5'- gGCGGccACGGCGGCCuc--GCUg----- -3' miRNA: 3'- -CGCC--UGCCGCCGGuaauUGAaauagu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 5090 | 0.68 | 0.988912 |
Target: 5'- gGUGGGCGGCGGCCcgUc--------- -3' miRNA: 3'- -CGCCUGCCGCCGGuaAuugaaauagu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 6082 | 0.68 | 0.990295 |
Target: 5'- gGCGGGCccgGGCGGCgGggGGCgg-GUCu -3' miRNA: 3'- -CGCCUG---CCGCCGgUaaUUGaaaUAGu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 7887 | 1.11 | 0.009556 |
Target: 5'- gGCGGACGGCGGCCAUUAACUUUAUCAc -3' miRNA: 3'- -CGCCUGCCGCCGGUAAUUGAAAUAGU- -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 21625 | 0.69 | 0.983836 |
Target: 5'- cCGG-UGGCGGCCAUcGGCgucAUCGa -3' miRNA: 3'- cGCCuGCCGCCGGUAaUUGaaaUAGU- -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 21923 | 0.66 | 0.998317 |
Target: 5'- cGCGcGGCGGUGGCCGgccGCg------ -3' miRNA: 3'- -CGC-CUGCCGCCGGUaauUGaaauagu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 23213 | 0.69 | 0.981802 |
Target: 5'- gGCGG-CGGCGGCCAgc-GCa------ -3' miRNA: 3'- -CGCCuGCCGCCGGUaauUGaaauagu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 24538 | 0.7 | 0.974549 |
Target: 5'- cCGGGCGGCGGCCucgggGACc------ -3' miRNA: 3'- cGCCUGCCGCCGGuaa--UUGaaauagu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 25905 | 0.71 | 0.958128 |
Target: 5'- gGCGGGCGGCGGUCcg-GGCg------ -3' miRNA: 3'- -CGCCUGCCGCCGGuaaUUGaaauagu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 27887 | 0.7 | 0.971718 |
Target: 5'- -gGGACGcGCGGCCAUUGGgggaAUCGu -3' miRNA: 3'- cgCCUGC-CGCCGGUAAUUgaaaUAGU- -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 29464 | 0.78 | 0.681458 |
Target: 5'- -aGGGCGGgcaCGGCCGUgGACUUUAUCu -3' miRNA: 3'- cgCCUGCC---GCCGGUAaUUGAAAUAGu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 33772 | 0.72 | 0.935611 |
Target: 5'- gGCGGcuGCGGCGGCCGccGugUUcgGUCu -3' miRNA: 3'- -CGCC--UGCCGCCGGUaaUugAAa-UAGu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 39188 | 0.67 | 0.995998 |
Target: 5'- -gGGGCGGCGGCC-UUGuCUgcguUCu -3' miRNA: 3'- cgCCUGCCGCCGGuAAUuGAaau-AGu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 42277 | 0.68 | 0.992652 |
Target: 5'- cGCGuGAUGGCGGCa---AACgagGUCAg -3' miRNA: 3'- -CGC-CUGCCGCCGguaaUUGaaaUAGU- -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 46463 | 0.66 | 0.998607 |
Target: 5'- cCGGAUGGCGGCgGUccAGCUcugggacaUGUCGc -3' miRNA: 3'- cGCCUGCCGCCGgUAa-UUGAa-------AUAGU- -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 52131 | 0.69 | 0.985693 |
Target: 5'- -aGGGCGGCGGUCAgcGACg------ -3' miRNA: 3'- cgCCUGCCGCCGGUaaUUGaaauagu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 53858 | 0.7 | 0.971718 |
Target: 5'- cGUGcGACGGCGGCCAgcuguUUGGCa------ -3' miRNA: 3'- -CGC-CUGCCGCCGGU-----AAUUGaaauagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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