Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5765 | 5' | -49.2 | NC_001806.1 | + | 151580 | 0.66 | 0.998853 |
Target: 5'- gGCGGcgGCGGCGGgCCAUggaGACa------ -3' miRNA: 3'- -CGCC--UGCCGCC-GGUAa--UUGaaauagu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 151542 | 0.67 | 0.994529 |
Target: 5'- cGUGGGCccgGGCGGCCGggGGCg------ -3' miRNA: 3'- -CGCCUG---CCGCCGGUaaUUGaaauagu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 147217 | 0.69 | 0.985693 |
Target: 5'- gGCGGAagaGGCGGCCccc-GCggggGUCGg -3' miRNA: 3'- -CGCCUg--CCGCCGGuaauUGaaa-UAGU- -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 144529 | 0.67 | 0.99531 |
Target: 5'- aGCGGGgGcGCGGCCGU--GCcg-AUCGc -3' miRNA: 3'- -CGCCUgC-CGCCGGUAauUGaaaUAGU- -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 136987 | 0.66 | 0.997978 |
Target: 5'- uGCGGucaugGCGGCGGCCGgcggggAGCg------ -3' miRNA: 3'- -CGCC-----UGCCGCCGGUaa----UUGaaauagu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 132186 | 0.67 | 0.997127 |
Target: 5'- cGUGGGCgcgccuGGCGGCCAUUcGCg------ -3' miRNA: 3'- -CGCCUG------CCGCCGGUAAuUGaaauagu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 127767 | 0.68 | 0.988912 |
Target: 5'- uGCGGGCcuguGGCGGCCGUcucGCg--AUCc -3' miRNA: 3'- -CGCCUG----CCGCCGGUAau-UGaaaUAGu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 126130 | 0.66 | 0.998525 |
Target: 5'- cGCGGAcgaCGGCGGCgAggccgGcgccgacacgcggcGCUUUAUCu -3' miRNA: 3'- -CGCCU---GCCGCCGgUaa---U--------------UGAAAUAGu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 125794 | 0.67 | 0.995998 |
Target: 5'- gGCGGGuaUGGUGGaCCGcgGACUcgGUCGg -3' miRNA: 3'- -CGCCU--GCCGCC-GGUaaUUGAaaUAGU- -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 123919 | 0.69 | 0.983836 |
Target: 5'- cCGGuACGGCGGCCA--AACUg----- -3' miRNA: 3'- cGCC-UGCCGCCGGUaaUUGAaauagu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 121022 | 0.66 | 0.997978 |
Target: 5'- gGCGGACGaGCGGCuCAagauCUUucggUGUCu -3' miRNA: 3'- -CGCCUGC-CGCCG-GUaauuGAA----AUAGu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 119487 | 0.67 | 0.99531 |
Target: 5'- cCGGGCGuGCGGCCugUGGCguugcAUCGg -3' miRNA: 3'- cGCCUGC-CGCCGGuaAUUGaaa--UAGU- -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 112429 | 0.66 | 0.998607 |
Target: 5'- cGCGGGCGGCcGGUCGacgggguGCUc-GUCAc -3' miRNA: 3'- -CGCCUGCCG-CCGGUaau----UGAaaUAGU- -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 109421 | 0.68 | 0.988912 |
Target: 5'- cGUGGggcGCGGCGGCCcgUGAUa------ -3' miRNA: 3'- -CGCC---UGCCGCCGGuaAUUGaaauagu -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 101939 | 0.7 | 0.977168 |
Target: 5'- -aGGGCGGCcaGGCCGggaaacAGCUggGUCAg -3' miRNA: 3'- cgCCUGCCG--CCGGUaa----UUGAaaUAGU- -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 100392 | 0.66 | 0.998607 |
Target: 5'- gGCGGcGCGGgGGCCGggguGCccgaUGUCGg -3' miRNA: 3'- -CGCC-UGCCgCCGGUaau-UGaa--AUAGU- -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 98637 | 0.67 | 0.997127 |
Target: 5'- cGUGGGCGGCGuGgUAUcGGCcgUGUCGg -3' miRNA: 3'- -CGCCUGCCGC-CgGUAaUUGaaAUAGU- -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 86385 | 0.7 | 0.976404 |
Target: 5'- cGCGGggcgcucggcuaacGCGGCGGCCGcuccggaGACggUAUCGu -3' miRNA: 3'- -CGCC--------------UGCCGCCGGUaa-----UUGaaAUAGU- -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 86179 | 0.68 | 0.992652 |
Target: 5'- uGCGcGCGGCGGgCCAUgAGCUUguaauacaccGUCAg -3' miRNA: 3'- -CGCcUGCCGCC-GGUAaUUGAAa---------UAGU- -5' |
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5765 | 5' | -49.2 | NC_001806.1 | + | 86087 | 0.73 | 0.893176 |
Target: 5'- cGCGGAgGGCGGCCAgccGCgcgaccGUCu -3' miRNA: 3'- -CGCCUgCCGCCGGUaauUGaaa---UAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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