Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 41816 | 0.67 | 0.944412 |
Target: 5'- gCCCCGCAAUAcgcgGGGGCGgGCGUc-- -3' miRNA: 3'- aGGGGUGUUGUa---CCUCGUaUGCGagc -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 49850 | 0.67 | 0.944412 |
Target: 5'- aCCCUGCAGCAgGGcgaGGCGUugGCcUGg -3' miRNA: 3'- aGGGGUGUUGUaCC---UCGUAugCGaGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 91990 | 0.67 | 0.939729 |
Target: 5'- --aCCGCGAgGUGGAGCAgcugaUGCGCa-- -3' miRNA: 3'- aggGGUGUUgUACCUCGU-----AUGCGagc -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 65696 | 0.67 | 0.934799 |
Target: 5'- gUCCCC-CAACcgGG-GCccGCGCUuCGa -3' miRNA: 3'- -AGGGGuGUUGuaCCuCGuaUGCGA-GC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 101792 | 0.68 | 0.929621 |
Target: 5'- cUCCCCACAgGgGUGGGGUuugugcggGUGCGgUUGa -3' miRNA: 3'- -AGGGGUGU-UgUACCUCG--------UAUGCgAGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 94501 | 0.68 | 0.929621 |
Target: 5'- gCCaCCGCcGCGcUGGAGC--GCGUUCGg -3' miRNA: 3'- aGG-GGUGuUGU-ACCUCGuaUGCGAGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 44284 | 0.69 | 0.900009 |
Target: 5'- cCCCCGCAACcaGGAGCuggGCGacCUUGg -3' miRNA: 3'- aGGGGUGUUGuaCCUCGua-UGC--GAGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 50501 | 0.69 | 0.900009 |
Target: 5'- gCCCCGCGGuCGUGGgggccgAGCAcgagGCGCUgGg -3' miRNA: 3'- aGGGGUGUU-GUACC------UCGUa---UGCGAgC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 43768 | 0.69 | 0.900009 |
Target: 5'- cCCCCACAcgccGCccccGGAGguUACGCUgGc -3' miRNA: 3'- aGGGGUGU----UGua--CCUCguAUGCGAgC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 114311 | 0.7 | 0.855796 |
Target: 5'- -gCCCACAACAUGGccgaacgcacaacGGCGcUGCucuGCUCGg -3' miRNA: 3'- agGGGUGUUGUACC-------------UCGU-AUG---CGAGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 89041 | 0.7 | 0.831948 |
Target: 5'- cCCCCGCAguACAccuugGGGGC--GCGCUUGa -3' miRNA: 3'- aGGGGUGU--UGUa----CCUCGuaUGCGAGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 82551 | 0.7 | 0.823346 |
Target: 5'- -gCCCGCGAUG-GGAGCGUGCGUgcccgCGu -3' miRNA: 3'- agGGGUGUUGUaCCUCGUAUGCGa----GC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 140466 | 0.7 | 0.82073 |
Target: 5'- cCCCCGaggcCAGCAugacguuaucucggUGGAggcGCAUugGCUCGg -3' miRNA: 3'- aGGGGU----GUUGU--------------ACCU---CGUAugCGAGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 3587 | 0.71 | 0.814563 |
Target: 5'- aUCCCCGCGGCGccguacccgGcGGGCAccgcGCGCUCGc -3' miRNA: 3'- -AGGGGUGUUGUa--------C-CUCGUa---UGCGAGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 91902 | 0.72 | 0.728858 |
Target: 5'- gUCCCCACGGcCAUGGGGCG---GCUgGa -3' miRNA: 3'- -AGGGGUGUU-GUACCUCGUaugCGAgC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 44455 | 0.72 | 0.728858 |
Target: 5'- gCCCgGCGuccGCGUGGAGCAUGCGg--- -3' miRNA: 3'- aGGGgUGU---UGUACCUCGUAUGCgagc -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 83067 | 0.72 | 0.71877 |
Target: 5'- gUCCCCcgGCAGCAgcUGGAagGCGgggGCGUUCGa -3' miRNA: 3'- -AGGGG--UGUUGU--ACCU--CGUa--UGCGAGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 145016 | 0.78 | 0.427014 |
Target: 5'- gCCCCACAACGgcccGGcGCAUGCGCUg- -3' miRNA: 3'- aGGGGUGUUGUa---CCuCGUAUGCGAgc -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 7534 | 1.1 | 0.004092 |
Target: 5'- cUCCCCACAACAUGGAGCAUACGCUCGg -3' miRNA: 3'- -AGGGGUGUUGUACCUCGUAUGCGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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