Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 3220 | 0.67 | 0.94885 |
Target: 5'- gUCCCCGCGcaggcGCAU-GAGCAccaGCGCgUCGc -3' miRNA: 3'- -AGGGGUGU-----UGUAcCUCGUa--UGCG-AGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 10345 | 0.67 | 0.94885 |
Target: 5'- aCCCCACGcACAUGuGAGacuucggggGCGCUgGg -3' miRNA: 3'- aGGGGUGU-UGUAC-CUCgua------UGCGAgC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 119855 | 0.67 | 0.94885 |
Target: 5'- aCUCCGUGGCGUGGGGCGggcgACGCg-- -3' miRNA: 3'- aGGGGUGUUGUACCUCGUa---UGCGagc -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 28294 | 0.67 | 0.953047 |
Target: 5'- cCCCCACucauACAcgGGAGCcggGCGC-Ca -3' miRNA: 3'- aGGGGUGu---UGUa-CCUCGua-UGCGaGc -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 47838 | 0.66 | 0.957006 |
Target: 5'- -aCCCGCGAgauccUAUGGGccGCGUACGC-CGa -3' miRNA: 3'- agGGGUGUU-----GUACCU--CGUAUGCGaGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 55965 | 0.66 | 0.960004 |
Target: 5'- cCUCCAC-ACGgaccaccggaugGGGGUGUGCGUUCGa -3' miRNA: 3'- aGGGGUGuUGUa-----------CCUCGUAUGCGAGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 55332 | 0.66 | 0.96073 |
Target: 5'- gUCCCC-CGG-GUGGGGCGgugAUGUUCGu -3' miRNA: 3'- -AGGGGuGUUgUACCUCGUa--UGCGAGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 116352 | 0.66 | 0.96073 |
Target: 5'- cCCCCugGACGUGG-GCcucacccACGC-CGg -3' miRNA: 3'- aGGGGugUUGUACCuCGua-----UGCGaGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 71809 | 0.66 | 0.963886 |
Target: 5'- gCCCgACcuggAGCcgGGGgggucgguaucguGCAUGCGCUCGu -3' miRNA: 3'- aGGGgUG----UUGuaCCU-------------CGUAUGCGAGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 119969 | 0.66 | 0.964225 |
Target: 5'- cUCCCgCugGGCAggcGGAGCugcugcUACGCUUu -3' miRNA: 3'- -AGGG-GugUUGUa--CCUCGu-----AUGCGAGc -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 84839 | 0.66 | 0.964225 |
Target: 5'- gCCCuauCACGGCAaGGAGCGccgGCGgUCGc -3' miRNA: 3'- aGGG---GUGUUGUaCCUCGUa--UGCgAGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 64131 | 0.66 | 0.967497 |
Target: 5'- gCCCCaggGCGAUGUGGcGCAUGcCGCgCGu -3' miRNA: 3'- aGGGG---UGUUGUACCuCGUAU-GCGaGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 138807 | 0.66 | 0.967497 |
Target: 5'- gCCCC-CGGC---GAGCGUGCGUUUGa -3' miRNA: 3'- aGGGGuGUUGuacCUCGUAUGCGAGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 77702 | 0.66 | 0.967497 |
Target: 5'- cCCCCGCuuccgacgGACAcccUGGAGUcgGC-CUCGa -3' miRNA: 3'- aGGGGUG--------UUGU---ACCUCGuaUGcGAGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 127793 | 0.66 | 0.970551 |
Target: 5'- -aUCCGC-GCAUGGAacuGCGUacGCGCUUGa -3' miRNA: 3'- agGGGUGuUGUACCU---CGUA--UGCGAGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 4652 | 0.66 | 0.973393 |
Target: 5'- gUCUCCGCGGCGgcUGGgccGGCGgGCGCggCGa -3' miRNA: 3'- -AGGGGUGUUGU--ACC---UCGUaUGCGa-GC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 2831 | 0.66 | 0.973393 |
Target: 5'- cCCCgGgGGCGUGGAGgGggGCGCgggcgCGg -3' miRNA: 3'- aGGGgUgUUGUACCUCgUa-UGCGa----GC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 9791 | 0.66 | 0.973393 |
Target: 5'- -gCCC-CGACGUGcGGGUggGUGgGCUCGg -3' miRNA: 3'- agGGGuGUUGUAC-CUCG--UAUgCGAGC- -5' |
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5766 | 5' | -53.3 | NC_001806.1 | + | 115654 | 0.66 | 0.973393 |
Target: 5'- -gCCCGCAACggGGAaGCccACGCgCGg -3' miRNA: 3'- agGGGUGUUGuaCCU-CGuaUGCGaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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