miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5766 5' -53.3 NC_001806.1 + 7534 1.1 0.004092
Target:  5'- cUCCCCACAACAUGGAGCAUACGCUCGg -3'
miRNA:   3'- -AGGGGUGUUGUACCUCGUAUGCGAGC- -5'
5766 5' -53.3 NC_001806.1 + 145016 0.78 0.427014
Target:  5'- gCCCCACAACGgcccGGcGCAUGCGCUg- -3'
miRNA:   3'- aGGGGUGUUGUa---CCuCGUAUGCGAgc -5'
5766 5' -53.3 NC_001806.1 + 83067 0.72 0.71877
Target:  5'- gUCCCCcgGCAGCAgcUGGAagGCGgggGCGUUCGa -3'
miRNA:   3'- -AGGGG--UGUUGU--ACCU--CGUa--UGCGAGC- -5'
5766 5' -53.3 NC_001806.1 + 44455 0.72 0.728858
Target:  5'- gCCCgGCGuccGCGUGGAGCAUGCGg--- -3'
miRNA:   3'- aGGGgUGU---UGUACCUCGUAUGCgagc -5'
5766 5' -53.3 NC_001806.1 + 91902 0.72 0.728858
Target:  5'- gUCCCCACGGcCAUGGGGCG---GCUgGa -3'
miRNA:   3'- -AGGGGUGUU-GUACCUCGUaugCGAgC- -5'
5766 5' -53.3 NC_001806.1 + 3587 0.71 0.814563
Target:  5'- aUCCCCGCGGCGccguacccgGcGGGCAccgcGCGCUCGc -3'
miRNA:   3'- -AGGGGUGUUGUa--------C-CUCGUa---UGCGAGC- -5'
5766 5' -53.3 NC_001806.1 + 140466 0.7 0.82073
Target:  5'- cCCCCGaggcCAGCAugacguuaucucggUGGAggcGCAUugGCUCGg -3'
miRNA:   3'- aGGGGU----GUUGU--------------ACCU---CGUAugCGAGC- -5'
5766 5' -53.3 NC_001806.1 + 82551 0.7 0.823346
Target:  5'- -gCCCGCGAUG-GGAGCGUGCGUgcccgCGu -3'
miRNA:   3'- agGGGUGUUGUaCCUCGUAUGCGa----GC- -5'
5766 5' -53.3 NC_001806.1 + 89041 0.7 0.831948
Target:  5'- cCCCCGCAguACAccuugGGGGC--GCGCUUGa -3'
miRNA:   3'- aGGGGUGU--UGUa----CCUCGuaUGCGAGC- -5'
5766 5' -53.3 NC_001806.1 + 114311 0.7 0.855796
Target:  5'- -gCCCACAACAUGGccgaacgcacaacGGCGcUGCucuGCUCGg -3'
miRNA:   3'- agGGGUGUUGUACC-------------UCGU-AUG---CGAGC- -5'
5766 5' -53.3 NC_001806.1 + 44284 0.69 0.900009
Target:  5'- cCCCCGCAACcaGGAGCuggGCGacCUUGg -3'
miRNA:   3'- aGGGGUGUUGuaCCUCGua-UGC--GAGC- -5'
5766 5' -53.3 NC_001806.1 + 43768 0.69 0.900009
Target:  5'- cCCCCACAcgccGCccccGGAGguUACGCUgGc -3'
miRNA:   3'- aGGGGUGU----UGua--CCUCguAUGCGAgC- -5'
5766 5' -53.3 NC_001806.1 + 50501 0.69 0.900009
Target:  5'- gCCCCGCGGuCGUGGgggccgAGCAcgagGCGCUgGg -3'
miRNA:   3'- aGGGGUGUU-GUACC------UCGUa---UGCGAgC- -5'
5766 5' -53.3 NC_001806.1 + 94501 0.68 0.929621
Target:  5'- gCCaCCGCcGCGcUGGAGC--GCGUUCGg -3'
miRNA:   3'- aGG-GGUGuUGU-ACCUCGuaUGCGAGC- -5'
5766 5' -53.3 NC_001806.1 + 101792 0.68 0.929621
Target:  5'- cUCCCCACAgGgGUGGGGUuugugcggGUGCGgUUGa -3'
miRNA:   3'- -AGGGGUGU-UgUACCUCG--------UAUGCgAGC- -5'
5766 5' -53.3 NC_001806.1 + 65696 0.67 0.934799
Target:  5'- gUCCCC-CAACcgGG-GCccGCGCUuCGa -3'
miRNA:   3'- -AGGGGuGUUGuaCCuCGuaUGCGA-GC- -5'
5766 5' -53.3 NC_001806.1 + 91990 0.67 0.939729
Target:  5'- --aCCGCGAgGUGGAGCAgcugaUGCGCa-- -3'
miRNA:   3'- aggGGUGUUgUACCUCGU-----AUGCGagc -5'
5766 5' -53.3 NC_001806.1 + 49850 0.67 0.944412
Target:  5'- aCCCUGCAGCAgGGcgaGGCGUugGCcUGg -3'
miRNA:   3'- aGGGGUGUUGUaCC---UCGUAugCGaGC- -5'
5766 5' -53.3 NC_001806.1 + 41816 0.67 0.944412
Target:  5'- gCCCCGCAAUAcgcgGGGGCGgGCGUc-- -3'
miRNA:   3'- aGGGGUGUUGUa---CCUCGUaUGCGagc -5'
5766 5' -53.3 NC_001806.1 + 52564 0.67 0.946216
Target:  5'- cUCCCCcggACGACAUGGccagcggcccgggggGGCAU-CGCgCGg -3'
miRNA:   3'- -AGGGG---UGUUGUACC---------------UCGUAuGCGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.