miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5766 5' -53.3 NC_001806.1 + 2831 0.66 0.973393
Target:  5'- cCCCgGgGGCGUGGAGgGggGCGCgggcgCGg -3'
miRNA:   3'- aGGGgUgUUGUACCUCgUa-UGCGa----GC- -5'
5766 5' -53.3 NC_001806.1 + 3220 0.67 0.94885
Target:  5'- gUCCCCGCGcaggcGCAU-GAGCAccaGCGCgUCGc -3'
miRNA:   3'- -AGGGGUGU-----UGUAcCUCGUa--UGCG-AGC- -5'
5766 5' -53.3 NC_001806.1 + 3587 0.71 0.814563
Target:  5'- aUCCCCGCGGCGccguacccgGcGGGCAccgcGCGCUCGc -3'
miRNA:   3'- -AGGGGUGUUGUa--------C-CUCGUa---UGCGAGC- -5'
5766 5' -53.3 NC_001806.1 + 4652 0.66 0.973393
Target:  5'- gUCUCCGCGGCGgcUGGgccGGCGgGCGCggCGa -3'
miRNA:   3'- -AGGGGUGUUGU--ACC---UCGUaUGCGa-GC- -5'
5766 5' -53.3 NC_001806.1 + 7534 1.1 0.004092
Target:  5'- cUCCCCACAACAUGGAGCAUACGCUCGg -3'
miRNA:   3'- -AGGGGUGUUGUACCUCGUAUGCGAGC- -5'
5766 5' -53.3 NC_001806.1 + 9791 0.66 0.973393
Target:  5'- -gCCC-CGACGUGcGGGUggGUGgGCUCGg -3'
miRNA:   3'- agGGGuGUUGUAC-CUCG--UAUgCGAGC- -5'
5766 5' -53.3 NC_001806.1 + 10345 0.67 0.94885
Target:  5'- aCCCCACGcACAUGuGAGacuucggggGCGCUgGg -3'
miRNA:   3'- aGGGGUGU-UGUAC-CUCgua------UGCGAgC- -5'
5766 5' -53.3 NC_001806.1 + 28294 0.67 0.953047
Target:  5'- cCCCCACucauACAcgGGAGCcggGCGC-Ca -3'
miRNA:   3'- aGGGGUGu---UGUa-CCUCGua-UGCGaGc -5'
5766 5' -53.3 NC_001806.1 + 41816 0.67 0.944412
Target:  5'- gCCCCGCAAUAcgcgGGGGCGgGCGUc-- -3'
miRNA:   3'- aGGGGUGUUGUa---CCUCGUaUGCGagc -5'
5766 5' -53.3 NC_001806.1 + 43768 0.69 0.900009
Target:  5'- cCCCCACAcgccGCccccGGAGguUACGCUgGc -3'
miRNA:   3'- aGGGGUGU----UGua--CCUCguAUGCGAgC- -5'
5766 5' -53.3 NC_001806.1 + 44284 0.69 0.900009
Target:  5'- cCCCCGCAACcaGGAGCuggGCGacCUUGg -3'
miRNA:   3'- aGGGGUGUUGuaCCUCGua-UGC--GAGC- -5'
5766 5' -53.3 NC_001806.1 + 44455 0.72 0.728858
Target:  5'- gCCCgGCGuccGCGUGGAGCAUGCGg--- -3'
miRNA:   3'- aGGGgUGU---UGUACCUCGUAUGCgagc -5'
5766 5' -53.3 NC_001806.1 + 47838 0.66 0.957006
Target:  5'- -aCCCGCGAgauccUAUGGGccGCGUACGC-CGa -3'
miRNA:   3'- agGGGUGUU-----GUACCU--CGUAUGCGaGC- -5'
5766 5' -53.3 NC_001806.1 + 49850 0.67 0.944412
Target:  5'- aCCCUGCAGCAgGGcgaGGCGUugGCcUGg -3'
miRNA:   3'- aGGGGUGUUGUaCC---UCGUAugCGaGC- -5'
5766 5' -53.3 NC_001806.1 + 50501 0.69 0.900009
Target:  5'- gCCCCGCGGuCGUGGgggccgAGCAcgagGCGCUgGg -3'
miRNA:   3'- aGGGGUGUU-GUACC------UCGUa---UGCGAgC- -5'
5766 5' -53.3 NC_001806.1 + 52564 0.67 0.946216
Target:  5'- cUCCCCcggACGACAUGGccagcggcccgggggGGCAU-CGCgCGg -3'
miRNA:   3'- -AGGGG---UGUUGUACC---------------UCGUAuGCGaGC- -5'
5766 5' -53.3 NC_001806.1 + 55332 0.66 0.96073
Target:  5'- gUCCCC-CGG-GUGGGGCGgugAUGUUCGu -3'
miRNA:   3'- -AGGGGuGUUgUACCUCGUa--UGCGAGC- -5'
5766 5' -53.3 NC_001806.1 + 55965 0.66 0.960004
Target:  5'- cCUCCAC-ACGgaccaccggaugGGGGUGUGCGUUCGa -3'
miRNA:   3'- aGGGGUGuUGUa-----------CCUCGUAUGCGAGC- -5'
5766 5' -53.3 NC_001806.1 + 64131 0.66 0.967497
Target:  5'- gCCCCaggGCGAUGUGGcGCAUGcCGCgCGu -3'
miRNA:   3'- aGGGG---UGUUGUACCuCGUAU-GCGaGC- -5'
5766 5' -53.3 NC_001806.1 + 65696 0.67 0.934799
Target:  5'- gUCCCC-CAACcgGG-GCccGCGCUuCGa -3'
miRNA:   3'- -AGGGGuGUUGuaCCuCGuaUGCGA-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.