Results 1 - 20 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 145016 | 0.78 | 0.427014 |
Target: 5'- gCCCCACAACGgcccGGcGCAUGCGCUg- -3' miRNA: 3'- aGGGGUGUUGUa---CCuCGUAUGCGAgc -5' |
|||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 140466 | 0.7 | 0.82073 |
Target: 5'- cCCCCGaggcCAGCAugacguuaucucggUGGAggcGCAUugGCUCGg -3' miRNA: 3'- aGGGGU----GUUGU--------------ACCU---CGUAugCGAGC- -5' |
|||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 138807 | 0.66 | 0.967497 |
Target: 5'- gCCCC-CGGC---GAGCGUGCGUUUGa -3' miRNA: 3'- aGGGGuGUUGuacCUCGUAUGCGAGC- -5' |
|||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 127793 | 0.66 | 0.970551 |
Target: 5'- -aUCCGC-GCAUGGAacuGCGUacGCGCUUGa -3' miRNA: 3'- agGGGUGuUGUACCU---CGUA--UGCGAGC- -5' |
|||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 119969 | 0.66 | 0.964225 |
Target: 5'- cUCCCgCugGGCAggcGGAGCugcugcUACGCUUu -3' miRNA: 3'- -AGGG-GugUUGUa--CCUCGu-----AUGCGAGc -5' |
|||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 119855 | 0.67 | 0.94885 |
Target: 5'- aCUCCGUGGCGUGGGGCGggcgACGCg-- -3' miRNA: 3'- aGGGGUGUUGUACCUCGUa---UGCGagc -5' |
|||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 116352 | 0.66 | 0.96073 |
Target: 5'- cCCCCugGACGUGG-GCcucacccACGC-CGg -3' miRNA: 3'- aGGGGugUUGUACCuCGua-----UGCGaGC- -5' |
|||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 115654 | 0.66 | 0.973393 |
Target: 5'- -gCCCGCAACggGGAaGCccACGCgCGg -3' miRNA: 3'- agGGGUGUUGuaCCU-CGuaUGCGaGC- -5' |
|||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 114311 | 0.7 | 0.855796 |
Target: 5'- -gCCCACAACAUGGccgaacgcacaacGGCGcUGCucuGCUCGg -3' miRNA: 3'- agGGGUGUUGUACC-------------UCGU-AUG---CGAGC- -5' |
|||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 101792 | 0.68 | 0.929621 |
Target: 5'- cUCCCCACAgGgGUGGGGUuugugcggGUGCGgUUGa -3' miRNA: 3'- -AGGGGUGU-UgUACCUCG--------UAUGCgAGC- -5' |
|||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 94501 | 0.68 | 0.929621 |
Target: 5'- gCCaCCGCcGCGcUGGAGC--GCGUUCGg -3' miRNA: 3'- aGG-GGUGuUGU-ACCUCGuaUGCGAGC- -5' |
|||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 91990 | 0.67 | 0.939729 |
Target: 5'- --aCCGCGAgGUGGAGCAgcugaUGCGCa-- -3' miRNA: 3'- aggGGUGUUgUACCUCGU-----AUGCGagc -5' |
|||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 91902 | 0.72 | 0.728858 |
Target: 5'- gUCCCCACGGcCAUGGGGCG---GCUgGa -3' miRNA: 3'- -AGGGGUGUU-GUACCUCGUaugCGAgC- -5' |
|||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 89041 | 0.7 | 0.831948 |
Target: 5'- cCCCCGCAguACAccuugGGGGC--GCGCUUGa -3' miRNA: 3'- aGGGGUGU--UGUa----CCUCGuaUGCGAGC- -5' |
|||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 84839 | 0.66 | 0.964225 |
Target: 5'- gCCCuauCACGGCAaGGAGCGccgGCGgUCGc -3' miRNA: 3'- aGGG---GUGUUGUaCCUCGUa--UGCgAGC- -5' |
|||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 83067 | 0.72 | 0.71877 |
Target: 5'- gUCCCCcgGCAGCAgcUGGAagGCGgggGCGUUCGa -3' miRNA: 3'- -AGGGG--UGUUGU--ACCU--CGUa--UGCGAGC- -5' |
|||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 82551 | 0.7 | 0.823346 |
Target: 5'- -gCCCGCGAUG-GGAGCGUGCGUgcccgCGu -3' miRNA: 3'- agGGGUGUUGUaCCUCGUAUGCGa----GC- -5' |
|||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 77702 | 0.66 | 0.967497 |
Target: 5'- cCCCCGCuuccgacgGACAcccUGGAGUcgGC-CUCGa -3' miRNA: 3'- aGGGGUG--------UUGU---ACCUCGuaUGcGAGC- -5' |
|||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 71809 | 0.66 | 0.963886 |
Target: 5'- gCCCgACcuggAGCcgGGGgggucgguaucguGCAUGCGCUCGu -3' miRNA: 3'- aGGGgUG----UUGuaCCU-------------CGUAUGCGAGC- -5' |
|||||||
5766 | 5' | -53.3 | NC_001806.1 | + | 65696 | 0.67 | 0.934799 |
Target: 5'- gUCCCC-CAACcgGG-GCccGCGCUuCGa -3' miRNA: 3'- -AGGGGuGUUGuaCCuCGuaUGCGA-GC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home