miRNA display CGI


Results 61 - 80 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5767 3' -56.7 NC_001806.1 + 27251 0.68 0.811827
Target:  5'- gGGCCGCCUCGGGGGC---GGGAcugGCCa -3'
miRNA:   3'- -CUGGUGGGGCUCUUGgauCCCU---UGGg -5'
5767 3' -56.7 NC_001806.1 + 92362 0.68 0.811827
Target:  5'- cGGCCcCCgCCGAGAGCagcuucgAGGGcgacguuGCCCg -3'
miRNA:   3'- -CUGGuGG-GGCUCUUGga-----UCCCu------UGGG- -5'
5767 3' -56.7 NC_001806.1 + 114127 0.68 0.811827
Target:  5'- cGCCACCCUGcAGAACaUGGuGGu-CCCg -3'
miRNA:   3'- cUGGUGGGGC-UCUUGgAUC-CCuuGGG- -5'
5767 3' -56.7 NC_001806.1 + 17173 0.68 0.809226
Target:  5'- gGGCCcCCCCGGGAaggcgggucuguggACCgUAGGG--CCCu -3'
miRNA:   3'- -CUGGuGGGGCUCU--------------UGG-AUCCCuuGGG- -5'
5767 3' -56.7 NC_001806.1 + 106351 0.68 0.803101
Target:  5'- cGCCcCCCCGAccGCCgguuGGGGCCCg -3'
miRNA:   3'- cUGGuGGGGCUcuUGGauc-CCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 83238 0.68 0.803101
Target:  5'- cACCGCCCCcucaAGGGCCcgcgGGGGGGCg- -3'
miRNA:   3'- cUGGUGGGGc---UCUUGGa---UCCCUUGgg -5'
5767 3' -56.7 NC_001806.1 + 28238 0.68 0.794223
Target:  5'- cGCCAuguugggggacCCCCGAcccuuacacugGAACCggccgccauguUGGGGGACCCc -3'
miRNA:   3'- cUGGU-----------GGGGCU-----------CUUGG-----------AUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 22561 0.68 0.794223
Target:  5'- --gCGCUgaCGGGGGCCgcGGGGAGCCCc -3'
miRNA:   3'- cugGUGGg-GCUCUUGGa-UCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 81815 0.68 0.785202
Target:  5'- uGCUuaagACCCCGcAGGGCCUGugccacgggcGGGAggGCCCu -3'
miRNA:   3'- cUGG----UGGGGC-UCUUGGAU----------CCCU--UGGG- -5'
5767 3' -56.7 NC_001806.1 + 107034 0.68 0.785202
Target:  5'- uGGCCGCCCgCG-GGGCCgcGGGcuGugCCg -3'
miRNA:   3'- -CUGGUGGG-GCuCUUGGauCCC--UugGG- -5'
5767 3' -56.7 NC_001806.1 + 121424 0.68 0.785202
Target:  5'- cGCCuugGgCCCGGGGGCCUGGuGGcACCUc -3'
miRNA:   3'- cUGG---UgGGGCUCUUGGAUC-CCuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 150114 0.68 0.785202
Target:  5'- cGGCCccguCCCCGGGGACCaacccGGcGCCCc -3'
miRNA:   3'- -CUGGu---GGGGCUCUUGGauc--CCuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 91364 0.68 0.776047
Target:  5'- cGGCCaACCCacaGGuGGACCgcgAGGGAcacgugguGCCCg -3'
miRNA:   3'- -CUGG-UGGGg--CU-CUUGGa--UCCCU--------UGGG- -5'
5767 3' -56.7 NC_001806.1 + 4392 0.68 0.776047
Target:  5'- cGCCGCCCgGGGcuugggcgcGGCCUcggagaggGGGGGugGCCCg -3'
miRNA:   3'- cUGGUGGGgCUC---------UUGGA--------UCCCU--UGGG- -5'
5767 3' -56.7 NC_001806.1 + 5096 0.69 0.766766
Target:  5'- cGGCgGCCCguCGguGGGGCCcGGGGAGCCg -3'
miRNA:   3'- -CUGgUGGG--GC--UCUUGGaUCCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 45376 0.69 0.766766
Target:  5'- uGGCCaaaugucuGCCCCGGGGGCCcu-GGuGCCCu -3'
miRNA:   3'- -CUGG--------UGGGGCUCUUGGaucCCuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 56920 0.69 0.766766
Target:  5'- cGACCAuCCCCaGGGuGCCgacgaacAGGGGcCCCg -3'
miRNA:   3'- -CUGGU-GGGG-CUCuUGGa------UCCCUuGGG- -5'
5767 3' -56.7 NC_001806.1 + 102348 0.69 0.766766
Target:  5'- gGACguCCCCcGGGGCCgccGGGAgcACCCc -3'
miRNA:   3'- -CUGguGGGGcUCUUGGau-CCCU--UGGG- -5'
5767 3' -56.7 NC_001806.1 + 44314 0.69 0.757367
Target:  5'- cGCCgGCCUCGAGggUCacaGGAACCCc -3'
miRNA:   3'- cUGG-UGGGGCUCuuGGaucCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 99702 0.69 0.757367
Target:  5'- cGCCggACCCUgggGAGGACCgUAGGGGGCgCu -3'
miRNA:   3'- cUGG--UGGGG---CUCUUGG-AUCCCUUGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.