miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5767 3' -56.7 NC_001806.1 + 22909 0.67 0.852914
Target:  5'- aGCC-CCCCGc-GGCCggAGGG-ACCCg -3'
miRNA:   3'- cUGGuGGGGCucUUGGa-UCCCuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 57891 0.67 0.848225
Target:  5'- cGCC-CCCCGAGcGCCcccgcuuggucguGGGAgugACCCg -3'
miRNA:   3'- cUGGuGGGGCUCuUGGau-----------CCCU---UGGG- -5'
5767 3' -56.7 NC_001806.1 + 95420 0.67 0.845061
Target:  5'- aGACCGuCgCCGcGGGCCcgGGGGGcagggGCCCg -3'
miRNA:   3'- -CUGGU-GgGGCuCUUGGa-UCCCU-----UGGG- -5'
5767 3' -56.7 NC_001806.1 + 134250 0.67 0.845061
Target:  5'- gGGCgGCCCCGGcAGCCggaauGaGGAGCUCg -3'
miRNA:   3'- -CUGgUGGGGCUcUUGGau---C-CCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 61267 0.67 0.845061
Target:  5'- cGACCGCCCCG---GCgUAGGaGGugCUg -3'
miRNA:   3'- -CUGGUGGGGCucuUGgAUCC-CUugGG- -5'
5767 3' -56.7 NC_001806.1 + 103028 0.67 0.845061
Target:  5'- cGGCCGCCgCCGucuccAGcGCCUccAGGGcGCCUg -3'
miRNA:   3'- -CUGGUGG-GGC-----UCuUGGA--UCCCuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 129701 0.67 0.845061
Target:  5'- cGCCuCUCCGGaGGCCcGGGGGGCCa -3'
miRNA:   3'- cUGGuGGGGCUcUUGGaUCCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 32670 0.67 0.845061
Target:  5'- -cCCACCCgCGAGuggcguggccGACCUuagccucuGGGGcGCCCc -3'
miRNA:   3'- cuGGUGGG-GCUC----------UUGGA--------UCCCuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 79970 0.67 0.845061
Target:  5'- cGCC-CCCCGcuAACCUcGGGu-CCCg -3'
miRNA:   3'- cUGGuGGGGCucUUGGAuCCCuuGGG- -5'
5767 3' -56.7 NC_001806.1 + 77211 0.67 0.842667
Target:  5'- uGCCAaggguggCCUGGGAGaugaacuuugacacCCUGGGGGGCCUg -3'
miRNA:   3'- cUGGUg------GGGCUCUU--------------GGAUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 26694 0.67 0.837018
Target:  5'- cACCGCCCggCGuGGGCCcGGGGGgcggggcugACCCc -3'
miRNA:   3'- cUGGUGGG--GCuCUUGGaUCCCU---------UGGG- -5'
5767 3' -56.7 NC_001806.1 + 50968 0.67 0.837018
Target:  5'- cGGCagACCCCGccuuucuucucaAGGACCU--GGAGCCCu -3'
miRNA:   3'- -CUGg-UGGGGC------------UCUUGGAucCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 60575 0.67 0.837018
Target:  5'- gGACCucccccuggauCCCCGGGAcguuACC-GGGGGccACCCc -3'
miRNA:   3'- -CUGGu----------GGGGCUCU----UGGaUCCCU--UGGG- -5'
5767 3' -56.7 NC_001806.1 + 115555 0.67 0.837018
Target:  5'- cGCC-CCCCGGGGuGCCgcgaacucguGGaGGACCCg -3'
miRNA:   3'- cUGGuGGGGCUCU-UGGau--------CC-CUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 106686 0.67 0.837018
Target:  5'- aACC-CCCCGGGGGCuCUucccGGGccCCCg -3'
miRNA:   3'- cUGGuGGGGCUCUUG-GAu---CCCuuGGG- -5'
5767 3' -56.7 NC_001806.1 + 54469 0.67 0.837018
Target:  5'- cGAUCGCCUCGAucACCUGccgcucgguGGGGuCCCu -3'
miRNA:   3'- -CUGGUGGGGCUcuUGGAU---------CCCUuGGG- -5'
5767 3' -56.7 NC_001806.1 + 71594 0.67 0.828794
Target:  5'- cGAUCACCgCGAcucguAGCCUaaucaGGGGAACCg -3'
miRNA:   3'- -CUGGUGGgGCUc----UUGGA-----UCCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 59189 0.67 0.826292
Target:  5'- uGCCGCUgCGAGGgugggguuuugaugGCagccAGGGGACCCa -3'
miRNA:   3'- cUGGUGGgGCUCU--------------UGga--UCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 43469 0.67 0.825454
Target:  5'- cACCACCCCGGGuucgaggcccccacGAUCgacGGGGccguggcGGCCCa -3'
miRNA:   3'- cUGGUGGGGCUC--------------UUGGa--UCCC-------UUGGG- -5'
5767 3' -56.7 NC_001806.1 + 9149 0.68 0.823774
Target:  5'- cGACaGCCUgGAGGGCCaucGGGGAgacaacggccguguaGCCCg -3'
miRNA:   3'- -CUGgUGGGgCUCUUGGa--UCCCU---------------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.