miRNA display CGI


Results 41 - 60 of 144 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5767 3' -56.7 NC_001806.1 + 97566 0.71 0.648794
Target:  5'- uGACCGaguaCCCGcucucgcgcguGGACCUGGGGGACUg -3'
miRNA:   3'- -CUGGUg---GGGCu----------CUUGGAUCCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 23785 0.71 0.648794
Target:  5'- -cCCACCCCcacGGGGCCgccGGGGGCCg -3'
miRNA:   3'- cuGGUGGGGc--UCUUGGau-CCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 96457 0.71 0.656877
Target:  5'- cGGCgGCUCCGAGuucccccggcacGCCUGGGGucgcggccgcGACCCa -3'
miRNA:   3'- -CUGgUGGGGCUCu-----------UGGAUCCC----------UUGGG- -5'
5767 3' -56.7 NC_001806.1 + 22874 0.71 0.658897
Target:  5'- cGGCCGUCCCGGGGcugGCC-GGGGcccGGCCCg -3'
miRNA:   3'- -CUGGUGGGGCUCU---UGGaUCCC---UUGGG- -5'
5767 3' -56.7 NC_001806.1 + 117822 0.7 0.679032
Target:  5'- --aCGCCCCGGGAugC-AGGGccagGACCUg -3'
miRNA:   3'- cugGUGGGGCUCUugGaUCCC----UUGGG- -5'
5767 3' -56.7 NC_001806.1 + 13504 0.7 0.689047
Target:  5'- ---gGCCCCGcGGAcaAUCUGGGGGGCCUc -3'
miRNA:   3'- cuggUGGGGC-UCU--UGGAUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 59984 0.7 0.689047
Target:  5'- cACCucucugGCCUCGGGGACCcGGGGGACggCCg -3'
miRNA:   3'- cUGG------UGGGGCUCUUGGaUCCCUUG--GG- -5'
5767 3' -56.7 NC_001806.1 + 18484 0.7 0.689047
Target:  5'- cGGCCACgaCCGcAGAcaGCCagggcuGGGAGCCCu -3'
miRNA:   3'- -CUGGUGg-GGC-UCU--UGGau----CCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 2822 0.7 0.699016
Target:  5'- gGGCUcggGCCCCGGGGGCgUggaGGGGGGCgCg -3'
miRNA:   3'- -CUGG---UGGGGCUCUUGgA---UCCCUUGgG- -5'
5767 3' -56.7 NC_001806.1 + 70209 0.7 0.704971
Target:  5'- aGCUGCUCCGGGAGCUguacgugaucuccAGGGGugCCg -3'
miRNA:   3'- cUGGUGGGGCUCUUGGa------------UCCCUugGG- -5'
5767 3' -56.7 NC_001806.1 + 30176 0.7 0.705962
Target:  5'- -cCCGCCCCGGGccccccgcguccgcGGCCgcgucGGGACCCg -3'
miRNA:   3'- cuGGUGGGGCUC--------------UUGGauc--CCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 82129 0.7 0.707941
Target:  5'- aGCCGCCCCuuGAugguguccaggucGCCgAGGGAcaGCCCc -3'
miRNA:   3'- cUGGUGGGGcuCU-------------UGGaUCCCU--UGGG- -5'
5767 3' -56.7 NC_001806.1 + 27857 0.7 0.70893
Target:  5'- gGGCCGCCCCGcgguGGGCCUGccuccccuGGGAcgcgcgGCCa -3'
miRNA:   3'- -CUGGUGGGGCu---CUUGGAU--------CCCU------UGGg -5'
5767 3' -56.7 NC_001806.1 + 21505 0.7 0.70893
Target:  5'- cGACCggGCCCCGgcccGGGGCCgcgaacGGGAgGCCCc -3'
miRNA:   3'- -CUGG--UGGGGC----UCUUGGau----CCCU-UGGG- -5'
5767 3' -56.7 NC_001806.1 + 22114 0.7 0.70893
Target:  5'- aGCCG-CCCGGGccUCUGGGGGgcGCCCg -3'
miRNA:   3'- cUGGUgGGGCUCuuGGAUCCCU--UGGG- -5'
5767 3' -56.7 NC_001806.1 + 72539 0.7 0.71878
Target:  5'- uGGgC-CCCCGGGAGggggUAGGGGGCCCg -3'
miRNA:   3'- -CUgGuGGGGCUCUUgg--AUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 80829 0.7 0.71878
Target:  5'- aGGCCgagGCCUCGAcccacucCCUGGGGAACCa -3'
miRNA:   3'- -CUGG---UGGGGCUcuu----GGAUCCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 77963 0.7 0.71878
Target:  5'- cGGCgGCCCCGGGGccGCCgcucGGAcCCCa -3'
miRNA:   3'- -CUGgUGGGGCUCU--UGGauc-CCUuGGG- -5'
5767 3' -56.7 NC_001806.1 + 3372 0.69 0.728558
Target:  5'- cGGCCAgCCCCGGGAcgGCCgccAGGucGCCg -3'
miRNA:   3'- -CUGGU-GGGGCUCU--UGGa--UCCcuUGGg -5'
5767 3' -56.7 NC_001806.1 + 33016 0.69 0.738254
Target:  5'- cGGCCguuggcgguaACCCCGAGuguucaucucaGGCCccgggccGGGAACCCg -3'
miRNA:   3'- -CUGG----------UGGGGCUC-----------UUGGau-----CCCUUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.