miRNA display CGI


Results 41 - 60 of 144 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5767 3' -56.7 NC_001806.1 + 14370 0.66 0.902102
Target:  5'- aGCC-CCCCaGGGGGCUggggugAGGGGACaCUg -3'
miRNA:   3'- cUGGuGGGG-CUCUUGGa-----UCCCUUG-GG- -5'
5767 3' -56.7 NC_001806.1 + 26508 0.66 0.902102
Target:  5'- cGGCCGCCCCGcc-GCCgccccccgccGGuGGGCCCc -3'
miRNA:   3'- -CUGGUGGGGCucuUGGau--------CC-CUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 86759 0.66 0.902102
Target:  5'- cGGCCGCCuCCGGGAaaucgGCCa--GGAGCUg -3'
miRNA:   3'- -CUGGUGG-GGCUCU-----UGGaucCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 66823 0.66 0.902727
Target:  5'- gGGCCGgCCCGGGuggccggugugcgccGCCUccuGGGGCCCg -3'
miRNA:   3'- -CUGGUgGGGCUCu--------------UGGAuc-CCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 115746 0.65 0.906427
Target:  5'- aACCGCCCCGcccuucCUUGGGGAGugcgauucuuuuauCCCa -3'
miRNA:   3'- cUGGUGGGGCucuu--GGAUCCCUU--------------GGG- -5'
5767 3' -56.7 NC_001806.1 + 20371 0.66 0.895079
Target:  5'- cGCCGucccguuggUCCCGgcguccggcgggcGGGACC-GGGGGGCCCg -3'
miRNA:   3'- cUGGU---------GGGGC-------------UCUUGGaUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 2688 0.66 0.895079
Target:  5'- uGGCUggGCCCCGGGGgcugccgccgccaGCCgcccAGGGGgucgggGCCCu -3'
miRNA:   3'- -CUGG--UGGGGCUCU-------------UGGa---UCCCU------UGGG- -5'
5767 3' -56.7 NC_001806.1 + 47554 0.66 0.875277
Target:  5'- cGGCCACCCgCGAcGGCCUcGGGcuCUa -3'
miRNA:   3'- -CUGGUGGG-GCUcUUGGAuCCCuuGGg -5'
5767 3' -56.7 NC_001806.1 + 109529 0.66 0.875277
Target:  5'- aGCgAgCUCGGGAGCCgGGGGAggugcGCCUg -3'
miRNA:   3'- cUGgUgGGGCUCUUGGaUCCCU-----UGGG- -5'
5767 3' -56.7 NC_001806.1 + 86330 0.66 0.880224
Target:  5'- gGACgGCCCCGAacGCCUgcagucccucgggcAGGGGucGCgCCa -3'
miRNA:   3'- -CUGgUGGGGCUcuUGGA--------------UCCCU--UG-GG- -5'
5767 3' -56.7 NC_001806.1 + 46172 0.66 0.882313
Target:  5'- cACCGCCCCccGGGCCccccGAACCCa -3'
miRNA:   3'- cUGGUGGGGcuCUUGGauccCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 102825 0.66 0.882313
Target:  5'- cACCAcCCCCGAcGAGCC--GGucGCCCc -3'
miRNA:   3'- cUGGU-GGGGCU-CUUGGauCCcuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 7273 0.66 0.882313
Target:  5'- cGugUuCCCCGGGAGCCccGGGu-UCCg -3'
miRNA:   3'- -CugGuGGGGCUCUUGGauCCCuuGGG- -5'
5767 3' -56.7 NC_001806.1 + 73985 0.66 0.889132
Target:  5'- -cCCGCCCCGgccGGGgcgGCCccgcAGGGGGCuCCg -3'
miRNA:   3'- cuGGUGGGGC---UCU---UGGa---UCCCUUG-GG- -5'
5767 3' -56.7 NC_001806.1 + 81778 0.66 0.882313
Target:  5'- cGCCGCCaaaaCGAGcGCg-GGGGGGCCa -3'
miRNA:   3'- cUGGUGGg---GCUCuUGgaUCCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 115927 0.66 0.889132
Target:  5'- aGACCuCCCCGcGcauGCuCUGGGGu-CCCu -3'
miRNA:   3'- -CUGGuGGGGCuCu--UG-GAUCCCuuGGG- -5'
5767 3' -56.7 NC_001806.1 + 31133 0.66 0.889132
Target:  5'- cACCcugcuCCCCGAG-ACCgcGGGuAACCa -3'
miRNA:   3'- cUGGu----GGGGCUCuUGGauCCC-UUGGg -5'
5767 3' -56.7 NC_001806.1 + 70155 0.66 0.889132
Target:  5'- cGGCCGCCCgGGGcGGCCUcGGc--CCCa -3'
miRNA:   3'- -CUGGUGGGgCUC-UUGGAuCCcuuGGG- -5'
5767 3' -56.7 NC_001806.1 + 118780 0.66 0.889132
Target:  5'- cGGCCGCCCCGGa---CUcGGGAcgGCCg -3'
miRNA:   3'- -CUGGUGGGGCUcuugGAuCCCU--UGGg -5'
5767 3' -56.7 NC_001806.1 + 29509 0.66 0.893773
Target:  5'- -uUCGCCCCGcgguaccuGAcCCUGGGGGggcacacggugaggGCCCu -3'
miRNA:   3'- cuGGUGGGGCu-------CUuGGAUCCCU--------------UGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.