miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5767 3' -56.7 NC_001806.1 + 26694 0.67 0.837018
Target:  5'- cACCGCCCggCGuGGGCCcGGGGGgcggggcugACCCc -3'
miRNA:   3'- cUGGUGGG--GCuCUUGGaUCCCU---------UGGG- -5'
5767 3' -56.7 NC_001806.1 + 71594 0.67 0.828794
Target:  5'- cGAUCACCgCGAcucguAGCCUaaucaGGGGAACCg -3'
miRNA:   3'- -CUGGUGGgGCUc----UUGGA-----UCCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 59189 0.67 0.826292
Target:  5'- uGCCGCUgCGAGGgugggguuuugaugGCagccAGGGGACCCa -3'
miRNA:   3'- cUGGUGGgGCUCU--------------UGga--UCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 43469 0.67 0.825454
Target:  5'- cACCACCCCGGGuucgaggcccccacGAUCgacGGGGccguggcGGCCCa -3'
miRNA:   3'- cUGGUGGGGCUC--------------UUGGa--UCCC-------UUGGG- -5'
5767 3' -56.7 NC_001806.1 + 103028 0.67 0.845061
Target:  5'- cGGCCGCCgCCGucuccAGcGCCUccAGGGcGCCUg -3'
miRNA:   3'- -CUGGUGG-GGC-----UCuUGGA--UCCCuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 129701 0.67 0.845061
Target:  5'- cGCCuCUCCGGaGGCCcGGGGGGCCa -3'
miRNA:   3'- cUGGuGGGGCUcUUGGaUCCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 107266 0.67 0.868028
Target:  5'- cGCCcuguAUgCCGAGuuUCUAGGGGGCCg -3'
miRNA:   3'- cUGG----UGgGGCUCuuGGAUCCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 119194 0.67 0.868028
Target:  5'- cGCCGCCCCGccGGCCgcgaAGGaGGcugcgGCCCa -3'
miRNA:   3'- cUGGUGGGGCucUUGGa---UCC-CU-----UGGG- -5'
5767 3' -56.7 NC_001806.1 + 130072 0.67 0.868028
Target:  5'- gGACgGCUCCGGGGcgcGCUc--GGAGCCCg -3'
miRNA:   3'- -CUGgUGGGGCUCU---UGGaucCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 23930 0.67 0.868028
Target:  5'- gGACCuggCCGgcggcGGGGCCUGGGGGGgCCg -3'
miRNA:   3'- -CUGGuggGGC-----UCUUGGAUCCCUUgGG- -5'
5767 3' -56.7 NC_001806.1 + 24691 0.67 0.867291
Target:  5'- cGCCGgCCCGGcccgguggcgcGGGCCgcggAGGGAcuuuugcGCCCg -3'
miRNA:   3'- cUGGUgGGGCU-----------CUUGGa---UCCCU-------UGGG- -5'
5767 3' -56.7 NC_001806.1 + 28131 0.67 0.865813
Target:  5'- -cCCGCCCCG-GAgcgaguacccgccgGCCUgAGGGccGCCCc -3'
miRNA:   3'- cuGGUGGGGCuCU--------------UGGA-UCCCu-UGGG- -5'
5767 3' -56.7 NC_001806.1 + 136636 0.67 0.860572
Target:  5'- cGGCCACCCCGGcGAuauccGCCUcccGGGcguuCCUg -3'
miRNA:   3'- -CUGGUGGGGCU-CU-----UGGAu--CCCuu--GGG- -5'
5767 3' -56.7 NC_001806.1 + 81468 0.67 0.860572
Target:  5'- cGGCC-CCuuGGGugcCCUGGGGGugCg -3'
miRNA:   3'- -CUGGuGGggCUCuu-GGAUCCCUugGg -5'
5767 3' -56.7 NC_001806.1 + 10760 0.67 0.860572
Target:  5'- cGACCGUCUCGGGcaccuGCUUGGGGGgcaucagcgagACCCa -3'
miRNA:   3'- -CUGGUGGGGCUCu----UGGAUCCCU-----------UGGG- -5'
5767 3' -56.7 NC_001806.1 + 22909 0.67 0.852914
Target:  5'- aGCC-CCCCGc-GGCCggAGGG-ACCCg -3'
miRNA:   3'- cUGGuGGGGCucUUGGa-UCCCuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 57891 0.67 0.848225
Target:  5'- cGCC-CCCCGAGcGCCcccgcuuggucguGGGAgugACCCg -3'
miRNA:   3'- cUGGuGGGGCUCuUGGau-----------CCCU---UGGG- -5'
5767 3' -56.7 NC_001806.1 + 79970 0.67 0.845061
Target:  5'- cGCC-CCCCGcuAACCUcGGGu-CCCg -3'
miRNA:   3'- cUGGuGGGGCucUUGGAuCCCuuGGG- -5'
5767 3' -56.7 NC_001806.1 + 32670 0.67 0.845061
Target:  5'- -cCCACCCgCGAGuggcguggccGACCUuagccucuGGGGcGCCCc -3'
miRNA:   3'- cuGGUGGG-GCUC----------UUGGA--------UCCCuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 114127 0.68 0.811827
Target:  5'- cGCCACCCUGcAGAACaUGGuGGu-CCCg -3'
miRNA:   3'- cUGGUGGGGC-UCUUGgAUC-CCuuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.