miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5767 3' -56.7 NC_001806.1 + 26508 0.66 0.902102
Target:  5'- cGGCCGCCCCGcc-GCCgccccccgccGGuGGGCCCc -3'
miRNA:   3'- -CUGGUGGGGCucuUGGau--------CC-CUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 14370 0.66 0.902102
Target:  5'- aGCC-CCCCaGGGGGCUggggugAGGGGACaCUg -3'
miRNA:   3'- cUGGuGGGG-CUCUUGGa-----UCCCUUG-GG- -5'
5767 3' -56.7 NC_001806.1 + 2497 0.66 0.902102
Target:  5'- cGCCGCCgCCGcacgcGGCCUGGGcggcgggggcGGGCCCg -3'
miRNA:   3'- cUGGUGG-GGCuc---UUGGAUCC----------CUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 151256 0.66 0.902102
Target:  5'- cGCC-CCCCGGGcccacGCCgggcgguGGGGGCCg -3'
miRNA:   3'- cUGGuGGGGCUCu----UGGau-----CCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 94010 0.66 0.902102
Target:  5'- uGGCCGCCCCGGuguccGAGCCcaccGuGGCCCg -3'
miRNA:   3'- -CUGGUGGGGCU-----CUUGGauc-CcUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 112871 0.66 0.902102
Target:  5'- cGCgCACgCCGGGGACCUAGuccccGCCCc -3'
miRNA:   3'- cUG-GUGgGGCUCUUGGAUCccu--UGGG- -5'
5767 3' -56.7 NC_001806.1 + 20371 0.66 0.895079
Target:  5'- cGCCGucccguuggUCCCGgcguccggcgggcGGGACC-GGGGGGCCCg -3'
miRNA:   3'- cUGGU---------GGGGC-------------UCUUGGaUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 147283 0.66 0.895729
Target:  5'- ---gGCCgCCGAGGACgUcaGGGGggUCCc -3'
miRNA:   3'- cuggUGG-GGCUCUUGgA--UCCCuuGGG- -5'
5767 3' -56.7 NC_001806.1 + 71046 0.66 0.898305
Target:  5'- cGACCGCgUCGuGcuuacgagccgucgcGACCUAGGG-GCCUg -3'
miRNA:   3'- -CUGGUGgGGCuC---------------UUGGAUCCCuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 143563 0.66 0.89958
Target:  5'- cGGCCACCgCCGcccacccacccACCUcGGGAuACCCa -3'
miRNA:   3'- -CUGGUGG-GGCucu--------UGGAuCCCU-UGGG- -5'
5767 3' -56.7 NC_001806.1 + 10991 0.66 0.902102
Target:  5'- cACCGCCCCGcGAuccauguCCcGGGGAuagcaGCCg -3'
miRNA:   3'- cUGGUGGGGCuCUu------GGaUCCCU-----UGGg -5'
5767 3' -56.7 NC_001806.1 + 10760 0.67 0.860572
Target:  5'- cGACCGUCUCGGGcaccuGCUUGGGGGgcaucagcgagACCCa -3'
miRNA:   3'- -CUGGUGGGGCUCu----UGGAUCCCU-----------UGGG- -5'
5767 3' -56.7 NC_001806.1 + 81468 0.67 0.860572
Target:  5'- cGGCC-CCuuGGGugcCCUGGGGGugCg -3'
miRNA:   3'- -CUGGuGGggCUCuu-GGAUCCCUugGg -5'
5767 3' -56.7 NC_001806.1 + 136636 0.67 0.860572
Target:  5'- cGGCCACCCCGGcGAuauccGCCUcccGGGcguuCCUg -3'
miRNA:   3'- -CUGGUGGGGCU-CU-----UGGAu--CCCuu--GGG- -5'
5767 3' -56.7 NC_001806.1 + 28131 0.67 0.865813
Target:  5'- -cCCGCCCCG-GAgcgaguacccgccgGCCUgAGGGccGCCCc -3'
miRNA:   3'- cuGGUGGGGCuCU--------------UGGA-UCCCu-UGGG- -5'
5767 3' -56.7 NC_001806.1 + 24691 0.67 0.867291
Target:  5'- cGCCGgCCCGGcccgguggcgcGGGCCgcggAGGGAcuuuugcGCCCg -3'
miRNA:   3'- cUGGUgGGGCU-----------CUUGGa---UCCCU-------UGGG- -5'
5767 3' -56.7 NC_001806.1 + 23930 0.67 0.868028
Target:  5'- gGACCuggCCGgcggcGGGGCCUGGGGGGgCCg -3'
miRNA:   3'- -CUGGuggGGC-----UCUUGGAUCCCUUgGG- -5'
5767 3' -56.7 NC_001806.1 + 130072 0.67 0.868028
Target:  5'- gGACgGCUCCGGGGcgcGCUc--GGAGCCCg -3'
miRNA:   3'- -CUGgUGGGGCUCU---UGGaucCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 119194 0.67 0.868028
Target:  5'- cGCCGCCCCGccGGCCgcgaAGGaGGcugcgGCCCa -3'
miRNA:   3'- cUGGUGGGGCucUUGGa---UCC-CU-----UGGG- -5'
5767 3' -56.7 NC_001806.1 + 22909 0.67 0.852914
Target:  5'- aGCC-CCCCGc-GGCCggAGGG-ACCCg -3'
miRNA:   3'- cUGGuGGGGCucUUGGa-UCCCuUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.