miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5767 3' -56.7 NC_001806.1 + 17173 0.68 0.809226
Target:  5'- gGGCCcCCCCGGGAaggcgggucuguggACCgUAGGG--CCCu -3'
miRNA:   3'- -CUGGuGGGGCUCU--------------UGG-AUCCCuuGGG- -5'
5767 3' -56.7 NC_001806.1 + 18484 0.7 0.689047
Target:  5'- cGGCCACgaCCGcAGAcaGCCagggcuGGGAGCCCu -3'
miRNA:   3'- -CUGGUGg-GGC-UCU--UGGau----CCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 19343 0.77 0.34431
Target:  5'- aACCGCCCCccaAGCCUccGGGGGGCCCu -3'
miRNA:   3'- cUGGUGGGGcucUUGGA--UCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 20371 0.66 0.895079
Target:  5'- cGCCGucccguuggUCCCGgcguccggcgggcGGGACC-GGGGGGCCCg -3'
miRNA:   3'- cUGGU---------GGGGC-------------UCUUGGaUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 21170 0.79 0.255582
Target:  5'- -cCCACCCCGAGcccaGACCgcgacgagcGGGGGGCCCu -3'
miRNA:   3'- cuGGUGGGGCUC----UUGGa--------UCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 21505 0.7 0.70893
Target:  5'- cGACCggGCCCCGgcccGGGGCCgcgaacGGGAgGCCCc -3'
miRNA:   3'- -CUGG--UGGGGC----UCUUGGau----CCCU-UGGG- -5'
5767 3' -56.7 NC_001806.1 + 22114 0.7 0.70893
Target:  5'- aGCCG-CCCGGGccUCUGGGGGgcGCCCg -3'
miRNA:   3'- cUGGUgGGGCUCuuGGAUCCCU--UGGG- -5'
5767 3' -56.7 NC_001806.1 + 22175 0.71 0.628556
Target:  5'- cGGgCGCCCCGGcGGCCguguGGGcGCCCg -3'
miRNA:   3'- -CUgGUGGGGCUcUUGGau--CCCuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 22561 0.68 0.794223
Target:  5'- --gCGCUgaCGGGGGCCgcGGGGAGCCCc -3'
miRNA:   3'- cugGUGGg-GCUCUUGGa-UCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 22874 0.71 0.658897
Target:  5'- cGGCCGUCCCGGGGcugGCC-GGGGcccGGCCCg -3'
miRNA:   3'- -CUGGUGGGGCUCU---UGGaUCCC---UUGGG- -5'
5767 3' -56.7 NC_001806.1 + 22909 0.67 0.852914
Target:  5'- aGCC-CCCCGc-GGCCggAGGG-ACCCg -3'
miRNA:   3'- cUGGuGGGGCucUUGGa-UCCCuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 23084 0.74 0.490216
Target:  5'- cGugCGCgCCGuGAGCCUGGucgccGGGGCCCu -3'
miRNA:   3'- -CugGUGgGGCuCUUGGAUC-----CCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 23785 0.71 0.648794
Target:  5'- -cCCACCCCcacGGGGCCgccGGGGGCCg -3'
miRNA:   3'- cuGGUGGGGc--UCUUGGau-CCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 23930 0.67 0.868028
Target:  5'- gGACCuggCCGgcggcGGGGCCUGGGGGGgCCg -3'
miRNA:   3'- -CUGGuggGGC-----UCUUGGAUCCCUUgGG- -5'
5767 3' -56.7 NC_001806.1 + 24691 0.67 0.867291
Target:  5'- cGCCGgCCCGGcccgguggcgcGGGCCgcggAGGGAcuuuugcGCCCg -3'
miRNA:   3'- cUGGUgGGGCU-----------CUUGGa---UCCCU-------UGGG- -5'
5767 3' -56.7 NC_001806.1 + 26508 0.66 0.902102
Target:  5'- cGGCCGCCCCGcc-GCCgccccccgccGGuGGGCCCc -3'
miRNA:   3'- -CUGGUGGGGCucuUGGau--------CC-CUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 26694 0.67 0.837018
Target:  5'- cACCGCCCggCGuGGGCCcGGGGGgcggggcugACCCc -3'
miRNA:   3'- cUGGUGGG--GCuCUUGGaUCCCU---------UGGG- -5'
5767 3' -56.7 NC_001806.1 + 27251 0.68 0.811827
Target:  5'- gGGCCGCCUCGGGGGC---GGGAcugGCCa -3'
miRNA:   3'- -CUGGUGGGGCUCUUGgauCCCU---UGGg -5'
5767 3' -56.7 NC_001806.1 + 27857 0.7 0.70893
Target:  5'- gGGCCGCCCCGcgguGGGCCUGccuccccuGGGAcgcgcgGCCa -3'
miRNA:   3'- -CUGGUGGGGCu---CUUGGAU--------CCCU------UGGg -5'
5767 3' -56.7 NC_001806.1 + 28131 0.67 0.865813
Target:  5'- -cCCGCCCCG-GAgcgaguacccgccgGCCUgAGGGccGCCCc -3'
miRNA:   3'- cuGGUGGGGCuCU--------------UGGA-UCCCu-UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.