miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5767 3' -56.7 NC_001806.1 + 32 0.71 0.647783
Target:  5'- cGACC-CCCgGGGggUgUguuuuggGGGGGGCCCg -3'
miRNA:   3'- -CUGGuGGGgCUCuuGgA-------UCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 2497 0.66 0.902102
Target:  5'- cGCCGCCgCCGcacgcGGCCUGGGcggcgggggcGGGCCCg -3'
miRNA:   3'- cUGGUGG-GGCuc---UUGGAUCC----------CUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 2688 0.66 0.895079
Target:  5'- uGGCUggGCCCCGGGGgcugccgccgccaGCCgcccAGGGGgucgggGCCCu -3'
miRNA:   3'- -CUGG--UGGGGCUCU-------------UGGa---UCCCU------UGGG- -5'
5767 3' -56.7 NC_001806.1 + 2822 0.7 0.699016
Target:  5'- gGGCUcggGCCCCGGGGGCgUggaGGGGGGCgCg -3'
miRNA:   3'- -CUGG---UGGGGCUCUUGgA---UCCCUUGgG- -5'
5767 3' -56.7 NC_001806.1 + 3372 0.69 0.728558
Target:  5'- cGGCCAgCCCCGGGAcgGCCgccAGGucGCCg -3'
miRNA:   3'- -CUGGU-GGGGCUCU--UGGa--UCCcuUGGg -5'
5767 3' -56.7 NC_001806.1 + 3949 0.66 0.875277
Target:  5'- cGCCAcguCCCCGGGGACCacgcgcgGGuucuGGAGCCa -3'
miRNA:   3'- cUGGU---GGGGCUCUUGGa------UC----CCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 4175 0.78 0.274249
Target:  5'- -cCCGCCCCGGGGGC---GGGGGCCCg -3'
miRNA:   3'- cuGGUGGGGCUCUUGgauCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 4392 0.68 0.776047
Target:  5'- cGCCGCCCgGGGcuugggcgcGGCCUcggagaggGGGGGugGCCCg -3'
miRNA:   3'- cUGGUGGGgCUC---------UUGGA--------UCCCU--UGGG- -5'
5767 3' -56.7 NC_001806.1 + 5096 0.69 0.766766
Target:  5'- cGGCgGCCCguCGguGGGGCCcGGGGAGCCg -3'
miRNA:   3'- -CUGgUGGG--GC--UCUUGGaUCCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 5577 0.72 0.578137
Target:  5'- -cCCGCCCCGAc-GCCggcacgccGGGGGCCCg -3'
miRNA:   3'- cuGGUGGGGCUcuUGGau------CCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 6338 0.71 0.638678
Target:  5'- gGACgCACCCCGGGGGCCUccgacgacAGa-AACCCa -3'
miRNA:   3'- -CUG-GUGGGGCUCUUGGA--------UCccUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 7273 0.66 0.882313
Target:  5'- cGugUuCCCCGGGAGCCccGGGu-UCCg -3'
miRNA:   3'- -CugGuGGGGCUCUUGGauCCCuuGGG- -5'
5767 3' -56.7 NC_001806.1 + 7300 1.12 0.001583
Target:  5'- cGACCACCCCGAGAACCUAGGGAACCCa -3'
miRNA:   3'- -CUGGUGGGGCUCUUGGAUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 7381 0.73 0.528648
Target:  5'- cGACaACCCCGGucuCCcAGGGAGCCCc -3'
miRNA:   3'- -CUGgUGGGGCUcuuGGaUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 7410 0.71 0.626532
Target:  5'- -gUCuCCCCGGGAGCCccggucuccccGGGAGCCCc -3'
miRNA:   3'- cuGGuGGGGCUCUUGGau---------CCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 9149 0.68 0.823774
Target:  5'- cGACaGCCUgGAGGGCCaucGGGGAgacaacggccguguaGCCCg -3'
miRNA:   3'- -CUGgUGGGgCUCUUGGa--UCCCU---------------UGGG- -5'
5767 3' -56.7 NC_001806.1 + 10760 0.67 0.860572
Target:  5'- cGACCGUCUCGGGcaccuGCUUGGGGGgcaucagcgagACCCa -3'
miRNA:   3'- -CUGGUGGGGCUCu----UGGAUCCCU-----------UGGG- -5'
5767 3' -56.7 NC_001806.1 + 10991 0.66 0.902102
Target:  5'- cACCGCCCCGcGAuccauguCCcGGGGAuagcaGCCg -3'
miRNA:   3'- cUGGUGGGGCuCUu------GGaUCCCU-----UGGg -5'
5767 3' -56.7 NC_001806.1 + 13504 0.7 0.689047
Target:  5'- ---gGCCCCGcGGAcaAUCUGGGGGGCCUc -3'
miRNA:   3'- cuggUGGGGC-UCU--UGGAUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 14370 0.66 0.902102
Target:  5'- aGCC-CCCCaGGGGGCUggggugAGGGGACaCUg -3'
miRNA:   3'- cUGGuGGGG-CUCUUGGa-----UCCCUUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.