miRNA display CGI


Results 1 - 20 of 144 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5767 3' -56.7 NC_001806.1 + 151742 0.71 0.647783
Target:  5'- cGACC-CCCgGGGggUgUguuuuggGGGGGGCCCg -3'
miRNA:   3'- -CUGGuGGGgCUCuuGgA-------UCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 151256 0.66 0.902102
Target:  5'- cGCC-CCCCGGGcccacGCCgggcgguGGGGGCCg -3'
miRNA:   3'- cUGGuGGGGCUCu----UGGau-----CCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 150304 0.71 0.638678
Target:  5'- uACCAUaCCCG-GAACCccAGGGGACCa -3'
miRNA:   3'- cUGGUG-GGGCuCUUGGa-UCCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 150114 0.68 0.785202
Target:  5'- cGGCCccguCCCCGGGGACCaacccGGcGCCCc -3'
miRNA:   3'- -CUGGu---GGGGCUCUUGGauc--CCuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 147770 0.65 0.906427
Target:  5'- cGGCCGCggacgcggggggCCCGgggcggggggcGGAGCCUggcaugggcgccgcGGGGGGCCUg -3'
miRNA:   3'- -CUGGUG------------GGGC-----------UCUUGGA--------------UCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 147677 0.79 0.255582
Target:  5'- -uCCGCCCCGGGGGCCggggcgcggGGGcGGGCCCc -3'
miRNA:   3'- cuGGUGGGGCUCUUGGa--------UCC-CUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 147283 0.66 0.895729
Target:  5'- ---gGCCgCCGAGGACgUcaGGGGggUCCc -3'
miRNA:   3'- cuggUGG-GGCUCUUGgA--UCCCuuGGG- -5'
5767 3' -56.7 NC_001806.1 + 144975 0.72 0.558186
Target:  5'- cGGCCcgggGCCCCGGcGGACCcaAGGGGcCCCg -3'
miRNA:   3'- -CUGG----UGGGGCU-CUUGGa-UCCCUuGGG- -5'
5767 3' -56.7 NC_001806.1 + 143563 0.66 0.89958
Target:  5'- cGGCCACCgCCGcccacccacccACCUcGGGAuACCCa -3'
miRNA:   3'- -CUGGUGG-GGCucu--------UGGAuCCCU-UGGG- -5'
5767 3' -56.7 NC_001806.1 + 137628 0.73 0.548283
Target:  5'- uGGCCGCCCUGgaacGGAcCCUGGGGuugGCCg -3'
miRNA:   3'- -CUGGUGGGGC----UCUuGGAUCCCu--UGGg -5'
5767 3' -56.7 NC_001806.1 + 136636 0.67 0.860572
Target:  5'- cGGCCACCCCGGcGAuauccGCCUcccGGGcguuCCUg -3'
miRNA:   3'- -CUGGUGGGGCU-CU-----UGGAu--CCCuu--GGG- -5'
5767 3' -56.7 NC_001806.1 + 134250 0.67 0.845061
Target:  5'- gGGCgGCCCCGGcAGCCggaauGaGGAGCUCg -3'
miRNA:   3'- -CUGgUGGGGCUcUUGGau---C-CCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 132676 0.69 0.738254
Target:  5'- cGCCGCgcuCCUGGGGGCCUGgcccgcgguGGGGGCCa -3'
miRNA:   3'- cUGGUG---GGGCUCUUGGAU---------CCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 131908 0.73 0.548283
Target:  5'- cGCCuCCCCGcuGGAGCCccuGGaGAACCCg -3'
miRNA:   3'- cUGGuGGGGC--UCUUGGau-CC-CUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 130072 0.67 0.868028
Target:  5'- gGACgGCUCCGGGGcgcGCUc--GGAGCCCg -3'
miRNA:   3'- -CUGgUGGGGCUCU---UGGaucCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 129701 0.67 0.845061
Target:  5'- cGCCuCUCCGGaGGCCcGGGGGGCCa -3'
miRNA:   3'- cUGGuGGGGCUcUUGGaUCCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 124829 0.73 0.548283
Target:  5'- -gUCGCCCCGA--GCCUGGGcGuACCCg -3'
miRNA:   3'- cuGGUGGGGCUcuUGGAUCC-CuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 121424 0.68 0.785202
Target:  5'- cGCCuugGgCCCGGGGGCCUGGuGGcACCUc -3'
miRNA:   3'- cUGG---UgGGGCUCUUGGAUC-CCuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 120226 0.71 0.605301
Target:  5'- -cCCAuucuCCUCGAGAACCUgaugcgcgccgucgAGGGGACCg -3'
miRNA:   3'- cuGGU----GGGGCUCUUGGA--------------UCCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 119194 0.67 0.868028
Target:  5'- cGCCGCCCCGccGGCCgcgaAGGaGGcugcgGCCCa -3'
miRNA:   3'- cUGGUGGGGCucUUGGa---UCC-CU-----UGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.