miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5767 3' -56.7 NC_001806.1 + 118780 0.66 0.889132
Target:  5'- cGGCCGCCCCGGa---CUcGGGAcgGCCg -3'
miRNA:   3'- -CUGGUGGGGCUcuugGAuCCCU--UGGg -5'
5767 3' -56.7 NC_001806.1 + 118586 0.72 0.56814
Target:  5'- cGCCcuUCCCGcGGACUcGGGGGACCCg -3'
miRNA:   3'- cUGGu-GGGGCuCUUGGaUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 117822 0.7 0.679032
Target:  5'- --aCGCCCCGGGAugC-AGGGccagGACCUg -3'
miRNA:   3'- cugGUGGGGCUCUugGaUCCC----UUGGG- -5'
5767 3' -56.7 NC_001806.1 + 115927 0.66 0.889132
Target:  5'- aGACCuCCCCGcGcauGCuCUGGGGu-CCCu -3'
miRNA:   3'- -CUGGuGGGGCuCu--UG-GAUCCCuuGGG- -5'
5767 3' -56.7 NC_001806.1 + 115746 0.65 0.906427
Target:  5'- aACCGCCCCGcccuucCUUGGGGAGugcgauucuuuuauCCCa -3'
miRNA:   3'- cUGGUGGGGCucuu--GGAUCCCUU--------------GGG- -5'
5767 3' -56.7 NC_001806.1 + 115555 0.67 0.837018
Target:  5'- cGCC-CCCCGGGGuGCCgcgaacucguGGaGGACCCg -3'
miRNA:   3'- cUGGuGGGGCUCU-UGGau--------CC-CUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 114127 0.68 0.811827
Target:  5'- cGCCACCCUGcAGAACaUGGuGGu-CCCg -3'
miRNA:   3'- cUGGUGGGGC-UCUUGgAUC-CCuuGGG- -5'
5767 3' -56.7 NC_001806.1 + 112871 0.66 0.902102
Target:  5'- cGCgCACgCCGGGGACCUAGuccccGCCCc -3'
miRNA:   3'- cUG-GUGgGGCUCUUGGAUCccu--UGGG- -5'
5767 3' -56.7 NC_001806.1 + 112332 0.69 0.738254
Target:  5'- gGGCCACCgCCGGGAggccgucgagGCCUGGcucguGGACCUc -3'
miRNA:   3'- -CUGGUGG-GGCUCU----------UGGAUCc----CUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 109529 0.66 0.875277
Target:  5'- aGCgAgCUCGGGAGCCgGGGGAggugcGCCUg -3'
miRNA:   3'- cUGgUgGGGCUCUUGGaUCCCU-----UGGG- -5'
5767 3' -56.7 NC_001806.1 + 109258 0.73 0.518928
Target:  5'- ---gGCCCCGGGcACC-AGGGAACUCg -3'
miRNA:   3'- cuggUGGGGCUCuUGGaUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 107266 0.67 0.868028
Target:  5'- cGCCcuguAUgCCGAGuuUCUAGGGGGCCg -3'
miRNA:   3'- cUGG----UGgGGCUCuuGGAUCCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 107034 0.68 0.785202
Target:  5'- uGGCCGCCCgCG-GGGCCgcGGGcuGugCCg -3'
miRNA:   3'- -CUGGUGGG-GCuCUUGGauCCC--UugGG- -5'
5767 3' -56.7 NC_001806.1 + 106686 0.67 0.837018
Target:  5'- aACC-CCCCGGGGGCuCUucccGGGccCCCg -3'
miRNA:   3'- cUGGuGGGGCUCUUG-GAu---CCCuuGGG- -5'
5767 3' -56.7 NC_001806.1 + 106351 0.68 0.803101
Target:  5'- cGCCcCCCCGAccGCCgguuGGGGCCCg -3'
miRNA:   3'- cUGGuGGGGCUcuUGGauc-CCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 103028 0.67 0.845061
Target:  5'- cGGCCGCCgCCGucuccAGcGCCUccAGGGcGCCUg -3'
miRNA:   3'- -CUGGUGG-GGC-----UCuUGGA--UCCCuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 102825 0.66 0.882313
Target:  5'- cACCAcCCCCGAcGAGCC--GGucGCCCc -3'
miRNA:   3'- cUGGU-GGGGCU-CUUGGauCCcuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 102348 0.69 0.766766
Target:  5'- gGACguCCCCcGGGGCCgccGGGAgcACCCc -3'
miRNA:   3'- -CUGguGGGGcUCUUGGau-CCCU--UGGG- -5'
5767 3' -56.7 NC_001806.1 + 99702 0.69 0.757367
Target:  5'- cGCCggACCCUgggGAGGACCgUAGGGGGCgCu -3'
miRNA:   3'- cUGG--UGGGG---CUCUUGG-AUCCCUUGgG- -5'
5767 3' -56.7 NC_001806.1 + 97566 0.71 0.648794
Target:  5'- uGACCGaguaCCCGcucucgcgcguGGACCUGGGGGACUg -3'
miRNA:   3'- -CUGGUg---GGGCu----------CUUGGAUCCCUUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.