miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5767 3' -56.7 NC_001806.1 + 7381 0.73 0.528648
Target:  5'- cGACaACCCCGGucuCCcAGGGAGCCCc -3'
miRNA:   3'- -CUGgUGGGGCUcuuGGaUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 137628 0.73 0.548283
Target:  5'- uGGCCGCCCUGgaacGGAcCCUGGGGuugGCCg -3'
miRNA:   3'- -CUGGUGGGGC----UCUuGGAUCCCu--UGGg -5'
5767 3' -56.7 NC_001806.1 + 124829 0.73 0.548283
Target:  5'- -gUCGCCCCGA--GCCUGGGcGuACCCg -3'
miRNA:   3'- cuGGUGGGGCUcuUGGAUCC-CuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 131908 0.73 0.548283
Target:  5'- cGCCuCCCCGcuGGAGCCccuGGaGAACCCg -3'
miRNA:   3'- cUGGuGGGGC--UCUUGGau-CC-CUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 144975 0.72 0.558186
Target:  5'- cGGCCcgggGCCCCGGcGGACCcaAGGGGcCCCg -3'
miRNA:   3'- -CUGG----UGGGGCU-CUUGGa-UCCCUuGGG- -5'
5767 3' -56.7 NC_001806.1 + 42588 0.72 0.558186
Target:  5'- cGugCGCCCCacGAgcGAGCgUAGGGAcgcGCCCu -3'
miRNA:   3'- -CugGUGGGG--CU--CUUGgAUCCCU---UGGG- -5'
5767 3' -56.7 NC_001806.1 + 118586 0.72 0.56814
Target:  5'- cGCCcuUCCCGcGGACUcGGGGGACCCg -3'
miRNA:   3'- cUGGu-GGGGCuCUUGGaUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 72486 0.72 0.578137
Target:  5'- cACgCACCCCcugcggggcGAGAucgcggGCCUgGGGGAGCCCu -3'
miRNA:   3'- cUG-GUGGGG---------CUCU------UGGA-UCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 5577 0.72 0.578137
Target:  5'- -cCCGCCCCGAc-GCCggcacgccGGGGGCCCg -3'
miRNA:   3'- cuGGUGGGGCUcuUGGau------CCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 120226 0.71 0.605301
Target:  5'- -cCCAuucuCCUCGAGAACCUgaugcgcgccgucgAGGGGACCg -3'
miRNA:   3'- cuGGU----GGGGCUCUUGGA--------------UCCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 7410 0.71 0.626532
Target:  5'- -gUCuCCCCGGGAGCCccggucuccccGGGAGCCCc -3'
miRNA:   3'- cuGGuGGGGCUCUUGGau---------CCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 22175 0.71 0.628556
Target:  5'- cGGgCGCCCCGGcGGCCguguGGGcGCCCg -3'
miRNA:   3'- -CUgGUGGGGCUcUUGGau--CCCuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 84415 0.71 0.628556
Target:  5'- aGGCUgACCCCGAGAcgcaGCCcGGGGAcggggGCCg -3'
miRNA:   3'- -CUGG-UGGGGCUCU----UGGaUCCCU-----UGGg -5'
5767 3' -56.7 NC_001806.1 + 67842 0.71 0.635641
Target:  5'- gGGCCGCCCCGcAGAaaguccgcacccacGCCguccGGGcuGCCCg -3'
miRNA:   3'- -CUGGUGGGGC-UCU--------------UGGau--CCCu-UGGG- -5'
5767 3' -56.7 NC_001806.1 + 6338 0.71 0.638678
Target:  5'- gGACgCACCCCGGGGGCCUccgacgacAGa-AACCCa -3'
miRNA:   3'- -CUG-GUGGGGCUCUUGGA--------UCccUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 96540 0.71 0.638678
Target:  5'- -cCCGCCCCuGGcGCCcccccaacGGGGGACCCg -3'
miRNA:   3'- cuGGUGGGGcUCuUGGa-------UCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 150304 0.71 0.638678
Target:  5'- uACCAUaCCCG-GAACCccAGGGGACCa -3'
miRNA:   3'- cUGGUG-GGGCuCUUGGa-UCCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 32 0.71 0.647783
Target:  5'- cGACC-CCCgGGGggUgUguuuuggGGGGGGCCCg -3'
miRNA:   3'- -CUGGuGGGgCUCuuGgA-------UCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 151742 0.71 0.647783
Target:  5'- cGACC-CCCgGGGggUgUguuuuggGGGGGGCCCg -3'
miRNA:   3'- -CUGGuGGGgCUCuuGgA-------UCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 23785 0.71 0.648794
Target:  5'- -cCCACCCCcacGGGGCCgccGGGGGCCg -3'
miRNA:   3'- cuGGUGGGGc--UCUUGGau-CCCUUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.