miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5767 3' -56.7 NC_001806.1 + 70155 0.66 0.889132
Target:  5'- cGGCCGCCCgGGGcGGCCUcGGc--CCCa -3'
miRNA:   3'- -CUGGUGGGgCUC-UUGGAuCCcuuGGG- -5'
5767 3' -56.7 NC_001806.1 + 118780 0.66 0.889132
Target:  5'- cGGCCGCCCCGGa---CUcGGGAcgGCCg -3'
miRNA:   3'- -CUGGUGGGGCUcuugGAuCCCU--UGGg -5'
5767 3' -56.7 NC_001806.1 + 46172 0.66 0.882313
Target:  5'- cACCGCCCCccGGGCCccccGAACCCa -3'
miRNA:   3'- cUGGUGGGGcuCUUGGauccCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 102825 0.66 0.882313
Target:  5'- cACCAcCCCCGAcGAGCC--GGucGCCCc -3'
miRNA:   3'- cUGGU-GGGGCU-CUUGGauCCcuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 7273 0.66 0.882313
Target:  5'- cGugUuCCCCGGGAGCCccGGGu-UCCg -3'
miRNA:   3'- -CugGuGGGGCUCUUGGauCCCuuGGG- -5'
5767 3' -56.7 NC_001806.1 + 81778 0.66 0.882313
Target:  5'- cGCCGCCaaaaCGAGcGCg-GGGGGGCCa -3'
miRNA:   3'- cUGGUGGg---GCUCuUGgaUCCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 86330 0.66 0.880224
Target:  5'- gGACgGCCCCGAacGCCUgcagucccucgggcAGGGGucGCgCCa -3'
miRNA:   3'- -CUGgUGGGGCUcuUGGA--------------UCCCU--UG-GG- -5'
5767 3' -56.7 NC_001806.1 + 109529 0.66 0.875277
Target:  5'- aGCgAgCUCGGGAGCCgGGGGAggugcGCCUg -3'
miRNA:   3'- cUGgUgGGGCUCUUGGaUCCCU-----UGGG- -5'
5767 3' -56.7 NC_001806.1 + 47554 0.66 0.875277
Target:  5'- cGGCCACCCgCGAcGGCCUcGGGcuCUa -3'
miRNA:   3'- -CUGGUGGG-GCUcUUGGAuCCCuuGGg -5'
5767 3' -56.7 NC_001806.1 + 3949 0.66 0.875277
Target:  5'- cGCCAcguCCCCGGGGACCacgcgcgGGuucuGGAGCCa -3'
miRNA:   3'- cUGGU---GGGGCUCUUGGa------UC----CCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 85729 0.66 0.872402
Target:  5'- cACCGCCCCGAacccugcgguccgGAGCCgcgcggccacgucgUccgGGGGGugCCa -3'
miRNA:   3'- cUGGUGGGGCU-------------CUUGG--------------A---UCCCUugGG- -5'
5767 3' -56.7 NC_001806.1 + 107266 0.67 0.868028
Target:  5'- cGCCcuguAUgCCGAGuuUCUAGGGGGCCg -3'
miRNA:   3'- cUGG----UGgGGCUCuuGGAUCCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 119194 0.67 0.868028
Target:  5'- cGCCGCCCCGccGGCCgcgaAGGaGGcugcgGCCCa -3'
miRNA:   3'- cUGGUGGGGCucUUGGa---UCC-CU-----UGGG- -5'
5767 3' -56.7 NC_001806.1 + 130072 0.67 0.868028
Target:  5'- gGACgGCUCCGGGGcgcGCUc--GGAGCCCg -3'
miRNA:   3'- -CUGgUGGGGCUCU---UGGaucCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 23930 0.67 0.868028
Target:  5'- gGACCuggCCGgcggcGGGGCCUGGGGGGgCCg -3'
miRNA:   3'- -CUGGuggGGC-----UCUUGGAUCCCUUgGG- -5'
5767 3' -56.7 NC_001806.1 + 24691 0.67 0.867291
Target:  5'- cGCCGgCCCGGcccgguggcgcGGGCCgcggAGGGAcuuuugcGCCCg -3'
miRNA:   3'- cUGGUgGGGCU-----------CUUGGa---UCCCU-------UGGG- -5'
5767 3' -56.7 NC_001806.1 + 28131 0.67 0.865813
Target:  5'- -cCCGCCCCG-GAgcgaguacccgccgGCCUgAGGGccGCCCc -3'
miRNA:   3'- cuGGUGGGGCuCU--------------UGGA-UCCCu-UGGG- -5'
5767 3' -56.7 NC_001806.1 + 136636 0.67 0.860572
Target:  5'- cGGCCACCCCGGcGAuauccGCCUcccGGGcguuCCUg -3'
miRNA:   3'- -CUGGUGGGGCU-CU-----UGGAu--CCCuu--GGG- -5'
5767 3' -56.7 NC_001806.1 + 81468 0.67 0.860572
Target:  5'- cGGCC-CCuuGGGugcCCUGGGGGugCg -3'
miRNA:   3'- -CUGGuGGggCUCuu-GGAUCCCUugGg -5'
5767 3' -56.7 NC_001806.1 + 10760 0.67 0.860572
Target:  5'- cGACCGUCUCGGGcaccuGCUUGGGGGgcaucagcgagACCCa -3'
miRNA:   3'- -CUGGUGGGGCUCu----UGGAUCCCU-----------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.