miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5767 3' -56.7 NC_001806.1 + 7300 1.12 0.001583
Target:  5'- cGACCACCCCGAGAACCUAGGGAACCCa -3'
miRNA:   3'- -CUGGUGGGGCUCUUGGAUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 67487 0.81 0.200814
Target:  5'- uGGCCGCCCucCGGGGucccgacccCCUGGGGAGCCCu -3'
miRNA:   3'- -CUGGUGGG--GCUCUu--------GGAUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 147677 0.79 0.255582
Target:  5'- -uCCGCCCCGGGGGCCggggcgcggGGGcGGGCCCc -3'
miRNA:   3'- cuGGUGGGGCUCUUGGa--------UCC-CUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 33348 0.79 0.255582
Target:  5'- uGGCCGCCCCGGcuGCa-GGGGGGCCCg -3'
miRNA:   3'- -CUGGUGGGGCUcuUGgaUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 21170 0.79 0.255582
Target:  5'- -cCCACCCCGAGcccaGACCgcgacgagcGGGGGGCCCu -3'
miRNA:   3'- cuGGUGGGGCUC----UUGGa--------UCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 4175 0.78 0.274249
Target:  5'- -cCCGCCCCGGGGGC---GGGGGCCCg -3'
miRNA:   3'- cuGGUGGGGCUCUUGgauCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 93901 0.78 0.300815
Target:  5'- aGGCCGCCCCGaAGA----GGGGGACCCc -3'
miRNA:   3'- -CUGGUGGGGC-UCUuggaUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 86968 0.77 0.336756
Target:  5'- cGGCCuCCUCGGGGcuGCuCUGGGGAAUCCg -3'
miRNA:   3'- -CUGGuGGGGCUCU--UG-GAUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 19343 0.77 0.34431
Target:  5'- aACCGCCCCccaAGCCUccGGGGGGCCCu -3'
miRNA:   3'- cUGGUGGGGcucUUGGA--UCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 70523 0.76 0.383879
Target:  5'- uGGCC-CCCCGAG-GCCaUGGGGGACgCg -3'
miRNA:   3'- -CUGGuGGGGCUCuUGG-AUCCCUUGgG- -5'
5767 3' -56.7 NC_001806.1 + 74910 0.76 0.392147
Target:  5'- gGACCuCCCCGAG-GCCguucggGGGGcGCCCc -3'
miRNA:   3'- -CUGGuGGGGCUCuUGGa-----UCCCuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 43697 0.75 0.409026
Target:  5'- -uCCGCCuUCGGGGuuGCCgGGGGAACCCg -3'
miRNA:   3'- cuGGUGG-GGCUCU--UGGaUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 56477 0.75 0.417633
Target:  5'- gGGCCACCgccacauggccuCCGAGAaacACCUGGGGccacagcggcaGGCCCg -3'
miRNA:   3'- -CUGGUGG------------GGCUCU---UGGAUCCC-----------UUGGG- -5'
5767 3' -56.7 NC_001806.1 + 65457 0.75 0.42635
Target:  5'- uGCCGcggcCCCCGGGu-CCUGGGGGcGCCCg -3'
miRNA:   3'- cUGGU----GGGGCUCuuGGAUCCCU-UGGG- -5'
5767 3' -56.7 NC_001806.1 + 23084 0.74 0.490216
Target:  5'- cGugCGCgCCGuGAGCCUGGucgccGGGGCCCu -3'
miRNA:   3'- -CugGUGgGGCuCUUGGAUC-----CCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 74344 0.74 0.490216
Target:  5'- gGGCCAgacgcuggacgcCCCCGAGGACCUGGcGGccuGGCUCu -3'
miRNA:   3'- -CUGGU------------GGGGCUCUUGGAUC-CC---UUGGG- -5'
5767 3' -56.7 NC_001806.1 + 39178 0.73 0.508319
Target:  5'- gGAUCGCCCCGGGGcggcgGCCUugucugcguucuuGGGGGccggGCCCc -3'
miRNA:   3'- -CUGGUGGGGCUCU-----UGGA-------------UCCCU----UGGG- -5'
5767 3' -56.7 NC_001806.1 + 51687 0.73 0.508319
Target:  5'- gGACguCCCCGAGGACCccguGGGcgacugcGACCCc -3'
miRNA:   3'- -CUGguGGGGCUCUUGGau--CCC-------UUGGG- -5'
5767 3' -56.7 NC_001806.1 + 48369 0.73 0.50928
Target:  5'- cGGCCcCCCCGAccGAugucaGCCUGGGGGACg- -3'
miRNA:   3'- -CUGGuGGGGCU--CU-----UGGAUCCCUUGgg -5'
5767 3' -56.7 NC_001806.1 + 109258 0.73 0.518928
Target:  5'- ---gGCCCCGGGcACC-AGGGAACUCg -3'
miRNA:   3'- cuggUGGGGCUCuUGGaUCCCUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.