miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5767 3' -56.7 NC_001806.1 + 28238 0.68 0.794223
Target:  5'- cGCCAuguugggggacCCCCGAcccuuacacugGAACCggccgccauguUGGGGGACCCc -3'
miRNA:   3'- cUGGU-----------GGGGCU-----------CUUGG-----------AUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 29509 0.66 0.893773
Target:  5'- -uUCGCCCCGcgguaccuGAcCCUGGGGGggcacacggugaggGCCCu -3'
miRNA:   3'- cuGGUGGGGCu-------CUuGGAUCCCU--------------UGGG- -5'
5767 3' -56.7 NC_001806.1 + 30176 0.7 0.705962
Target:  5'- -cCCGCCCCGGGccccccgcguccgcGGCCgcgucGGGACCCg -3'
miRNA:   3'- cuGGUGGGGCUC--------------UUGGauc--CCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 31133 0.66 0.889132
Target:  5'- cACCcugcuCCCCGAG-ACCgcGGGuAACCa -3'
miRNA:   3'- cUGGu----GGGGCUCuUGGauCCC-UUGGg -5'
5767 3' -56.7 NC_001806.1 + 32670 0.67 0.845061
Target:  5'- -cCCACCCgCGAGuggcguggccGACCUuagccucuGGGGcGCCCc -3'
miRNA:   3'- cuGGUGGG-GCUC----------UUGGA--------UCCCuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 33016 0.69 0.738254
Target:  5'- cGGCCguuggcgguaACCCCGAGuguucaucucaGGCCccgggccGGGAACCCg -3'
miRNA:   3'- -CUGG----------UGGGGCUC-----------UUGGau-----CCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 33348 0.79 0.255582
Target:  5'- uGGCCGCCCCGGcuGCa-GGGGGGCCCg -3'
miRNA:   3'- -CUGGUGGGGCUcuUGgaUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 34348 0.71 0.648794
Target:  5'- cGGCC-CCCgGGGAAC--GGGGGACCg -3'
miRNA:   3'- -CUGGuGGGgCUCUUGgaUCCCUUGGg -5'
5767 3' -56.7 NC_001806.1 + 39178 0.73 0.508319
Target:  5'- gGAUCGCCCCGGGGcggcgGCCUugucugcguucuuGGGGGccggGCCCc -3'
miRNA:   3'- -CUGGUGGGGCUCU-----UGGA-------------UCCCU----UGGG- -5'
5767 3' -56.7 NC_001806.1 + 42588 0.72 0.558186
Target:  5'- cGugCGCCCCacGAgcGAGCgUAGGGAcgcGCCCu -3'
miRNA:   3'- -CugGUGGGG--CU--CUUGgAUCCCU---UGGG- -5'
5767 3' -56.7 NC_001806.1 + 43469 0.67 0.825454
Target:  5'- cACCACCCCGGGuucgaggcccccacGAUCgacGGGGccguggcGGCCCa -3'
miRNA:   3'- cUGGUGGGGCUC--------------UUGGa--UCCC-------UUGGG- -5'
5767 3' -56.7 NC_001806.1 + 43697 0.75 0.409026
Target:  5'- -uCCGCCuUCGGGGuuGCCgGGGGAACCCg -3'
miRNA:   3'- cuGGUGG-GGCUCU--UGGaUCCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 44314 0.69 0.757367
Target:  5'- cGCCgGCCUCGAGggUCacaGGAACCCc -3'
miRNA:   3'- cUGG-UGGGGCUCuuGGaucCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 45376 0.69 0.766766
Target:  5'- uGGCCaaaugucuGCCCCGGGGGCCcu-GGuGCCCu -3'
miRNA:   3'- -CUGG--------UGGGGCUCUUGGaucCCuUGGG- -5'
5767 3' -56.7 NC_001806.1 + 46172 0.66 0.882313
Target:  5'- cACCGCCCCccGGGCCccccGAACCCa -3'
miRNA:   3'- cUGGUGGGGcuCUUGGauccCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 47554 0.66 0.875277
Target:  5'- cGGCCACCCgCGAcGGCCUcGGGcuCUa -3'
miRNA:   3'- -CUGGUGGG-GCUcUUGGAuCCCuuGGg -5'
5767 3' -56.7 NC_001806.1 + 48369 0.73 0.50928
Target:  5'- cGGCCcCCCCGAccGAugucaGCCUGGGGGACg- -3'
miRNA:   3'- -CUGGuGGGGCU--CU-----UGGAUCCCUUGgg -5'
5767 3' -56.7 NC_001806.1 + 50968 0.67 0.837018
Target:  5'- cGGCagACCCCGccuuucuucucaAGGACCU--GGAGCCCu -3'
miRNA:   3'- -CUGg-UGGGGC------------UCUUGGAucCCUUGGG- -5'
5767 3' -56.7 NC_001806.1 + 51687 0.73 0.508319
Target:  5'- gGACguCCCCGAGGACCccguGGGcgacugcGACCCc -3'
miRNA:   3'- -CUGguGGGGCUCUUGGau--CCC-------UUGGG- -5'
5767 3' -56.7 NC_001806.1 + 54469 0.67 0.837018
Target:  5'- cGAUCGCCUCGAucACCUGccgcucgguGGGGuCCCu -3'
miRNA:   3'- -CUGGUGGGGCUcuUGGAU---------CCCUuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.