Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5767 | 5' | -59.3 | NC_001806.1 | + | 2672 | 0.71 | 0.495601 |
Target: 5'- cGCGGGCgccgCCguGuggcuGGGCCCCGGGGg-- -3' miRNA: 3'- -CGCUCGa---GGguC-----UCUGGGGUCCCaug -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 100069 | 0.71 | 0.486231 |
Target: 5'- gGCGAcGCuuUCCCGacccccGGACCCCAGGGUc- -3' miRNA: 3'- -CGCU-CG--AGGGUc-----UCUGGGGUCCCAug -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 77524 | 0.72 | 0.423206 |
Target: 5'- aGUGAGCggaggCCCGG-GGCCCCu-GGUGCu -3' miRNA: 3'- -CGCUCGa----GGGUCuCUGGGGucCCAUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 102057 | 0.72 | 0.414606 |
Target: 5'- cCGAGUcggaCCCGGAGGCCCCAcGGGc-- -3' miRNA: 3'- cGCUCGa---GGGUCUCUGGGGU-CCCaug -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 93574 | 0.72 | 0.414606 |
Target: 5'- cGCGAcgccguucgGCggCCCGGGGGCCCCGGGaccgGCa -3' miRNA: 3'- -CGCU---------CGa-GGGUCUCUGGGGUCCca--UG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 105118 | 0.72 | 0.403588 |
Target: 5'- gGCGggaggauuggggacAGCUUUCGGGGgcggccgugccGCCCCAGGGUGCc -3' miRNA: 3'- -CGC--------------UCGAGGGUCUC-----------UGGGGUCCCAUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 58055 | 0.73 | 0.397732 |
Target: 5'- gGCucGCUCCCAGAGGCCCgGGaGGn-- -3' miRNA: 3'- -CGcuCGAGGGUCUCUGGGgUC-CCaug -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 110079 | 0.73 | 0.390284 |
Target: 5'- cGCGGGCggcgacguaacacggCCCAGAGGCCCCcuacGGUGg -3' miRNA: 3'- -CGCUCGa--------------GGGUCUCUGGGGuc--CCAUg -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 32178 | 0.73 | 0.381306 |
Target: 5'- gGCGGuGCuUCUUAGAGACCgCCGGGGgACg -3' miRNA: 3'- -CGCU-CG-AGGGUCUCUGG-GGUCCCaUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 20396 | 0.75 | 0.306195 |
Target: 5'- gGCGGGCgggaCCGGGGGgCCCGGGG-ACg -3' miRNA: 3'- -CGCUCGag--GGUCUCUgGGGUCCCaUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 58080 | 0.75 | 0.305504 |
Target: 5'- cCGAGCUCCCggcugaaGGAGACCCCuGGcUAUg -3' miRNA: 3'- cGCUCGAGGG-------UCUCUGGGGuCCcAUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 19891 | 0.76 | 0.254668 |
Target: 5'- gGUGGGUUUCUgucgucGGAGGcCCCCGGGGUGCg -3' miRNA: 3'- -CGCUCGAGGG------UCUCU-GGGGUCCCAUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 7334 | 1.1 | 0.00116 |
Target: 5'- cGCGAGCUCCCAGAGACCCCAGGGUACc -3' miRNA: 3'- -CGCUCGAGGGUCUCUGGGGUCCCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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