miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5767 5' -59.3 NC_001806.1 + 59979 0.67 0.683011
Target:  5'- cGCGgcaccucucuGGC-CUCGGGGACCCgGGGG-ACg -3'
miRNA:   3'- -CGC----------UCGaGGGUCUCUGGGgUCCCaUG- -5'
5767 5' -59.3 NC_001806.1 + 150878 0.68 0.643058
Target:  5'- cGCGGGCcagggCCCGGgcacgggccucGGGCCCCAGGcacgGCc -3'
miRNA:   3'- -CGCUCGa----GGGUC-----------UCUGGGGUCCca--UG- -5'
5767 5' -59.3 NC_001806.1 + 49351 0.68 0.643058
Target:  5'- cCGAGCgUCCCGGcAGcGCCCCGGGcccgaUGCg -3'
miRNA:   3'- cGCUCG-AGGGUC-UC-UGGGGUCCc----AUG- -5'
5767 5' -59.3 NC_001806.1 + 17048 0.68 0.643058
Target:  5'- aCGAGCaCCCcGAacgacgGGCCCCGGGGUu- -3'
miRNA:   3'- cGCUCGaGGGuCU------CUGGGGUCCCAug -5'
5767 5' -59.3 NC_001806.1 + 102359 0.68 0.643058
Target:  5'- -gGGGCcgCCgGGAGcACCCCGuGGUGCa -3'
miRNA:   3'- cgCUCGa-GGgUCUC-UGGGGUcCCAUG- -5'
5767 5' -59.3 NC_001806.1 + 105169 0.68 0.637042
Target:  5'- cCGAGC-CCCAGAgcaacgcgggcccacGACCCCAuaucGGGgACa -3'
miRNA:   3'- cGCUCGaGGGUCU---------------CUGGGGU----CCCaUG- -5'
5767 5' -59.3 NC_001806.1 + 131367 0.68 0.63303
Target:  5'- -gGAGCUCCCcaccGAGGCCUggcccaugaugCAGGGgGCg -3'
miRNA:   3'- cgCUCGAGGGu---CUCUGGG-----------GUCCCaUG- -5'
5767 5' -59.3 NC_001806.1 + 99973 0.68 0.623001
Target:  5'- cGCGcGGCgcgCCUcGAGccuCCCCGGGGUAg -3'
miRNA:   3'- -CGC-UCGa--GGGuCUCu--GGGGUCCCAUg -5'
5767 5' -59.3 NC_001806.1 + 71262 0.68 0.623001
Target:  5'- -gGAGuCUCCCAGGGACCUgGaGGUccGCg -3'
miRNA:   3'- cgCUC-GAGGGUCUCUGGGgUcCCA--UG- -5'
5767 5' -59.3 NC_001806.1 + 4123 0.69 0.612979
Target:  5'- uCGGGCgcccCCCAGAGGCCCgGGcGGc-- -3'
miRNA:   3'- cGCUCGa---GGGUCUCUGGGgUC-CCaug -5'
5767 5' -59.3 NC_001806.1 + 147663 0.69 0.60297
Target:  5'- gGCGGGCggCCGGcuccGCCCCGGGGgcCg -3'
miRNA:   3'- -CGCUCGagGGUCuc--UGGGGUCCCauG- -5'
5767 5' -59.3 NC_001806.1 + 60090 0.69 0.592982
Target:  5'- cGCGuuCUCC---GGGCCCUGGGGUACg -3'
miRNA:   3'- -CGCucGAGGgucUCUGGGGUCCCAUG- -5'
5767 5' -59.3 NC_001806.1 + 41833 0.69 0.583022
Target:  5'- gGCGGGCg-UCAG-GGCCCCGGGcgcGUACg -3'
miRNA:   3'- -CGCUCGagGGUCuCUGGGGUCC---CAUG- -5'
5767 5' -59.3 NC_001806.1 + 7271 0.69 0.583022
Target:  5'- cGCGuGUUCCCcGGGAgCCCcGGGUuccGCg -3'
miRNA:   3'- -CGCuCGAGGGuCUCUgGGGuCCCA---UG- -5'
5767 5' -59.3 NC_001806.1 + 90322 0.69 0.583022
Target:  5'- cGUGGGUUCUCGcacgacGGGGCUCgGGGGUACc -3'
miRNA:   3'- -CGCUCGAGGGU------CUCUGGGgUCCCAUG- -5'
5767 5' -59.3 NC_001806.1 + 135394 0.69 0.573095
Target:  5'- uCGuGCUCCCAGAGgcgcgacaggcGCUCCAGGuccugggcGUACg -3'
miRNA:   3'- cGCuCGAGGGUCUC-----------UGGGGUCC--------CAUG- -5'
5767 5' -59.3 NC_001806.1 + 2452 0.7 0.553369
Target:  5'- gGCG-GCcCCCGGcGGCCCCgugGGGGUGg -3'
miRNA:   3'- -CGCuCGaGGGUCuCUGGGG---UCCCAUg -5'
5767 5' -59.3 NC_001806.1 + 93895 0.7 0.552388
Target:  5'- cGCGGGaggccgCCCcgaagagGGGGACCCCGGGGc-- -3'
miRNA:   3'- -CGCUCga----GGG-------UCUCUGGGGUCCCaug -5'
5767 5' -59.3 NC_001806.1 + 2819 0.7 0.543581
Target:  5'- gGCGGGCUC----GGGCCCCGGGG-GCg -3'
miRNA:   3'- -CGCUCGAGggucUCUGGGGUCCCaUG- -5'
5767 5' -59.3 NC_001806.1 + 57072 0.7 0.524182
Target:  5'- cCGGGCUCCCcGAGACUCCacagaacaAGGGccGCu -3'
miRNA:   3'- cGCUCGAGGGuCUCUGGGG--------UCCCa-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.