Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5767 | 5' | -59.3 | NC_001806.1 | + | 41833 | 0.69 | 0.583022 |
Target: 5'- gGCGGGCg-UCAG-GGCCCCGGGcgcGUACg -3' miRNA: 3'- -CGCUCGagGGUCuCUGGGGUCC---CAUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 60090 | 0.69 | 0.592982 |
Target: 5'- cGCGuuCUCC---GGGCCCUGGGGUACg -3' miRNA: 3'- -CGCucGAGGgucUCUGGGGUCCCAUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 147663 | 0.69 | 0.60297 |
Target: 5'- gGCGGGCggCCGGcuccGCCCCGGGGgcCg -3' miRNA: 3'- -CGCUCGagGGUCuc--UGGGGUCCCauG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 4123 | 0.69 | 0.612979 |
Target: 5'- uCGGGCgcccCCCAGAGGCCCgGGcGGc-- -3' miRNA: 3'- cGCUCGa---GGGUCUCUGGGgUC-CCaug -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 99973 | 0.68 | 0.623001 |
Target: 5'- cGCGcGGCgcgCCUcGAGccuCCCCGGGGUAg -3' miRNA: 3'- -CGC-UCGa--GGGuCUCu--GGGGUCCCAUg -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 71262 | 0.68 | 0.623001 |
Target: 5'- -gGAGuCUCCCAGGGACCUgGaGGUccGCg -3' miRNA: 3'- cgCUC-GAGGGUCUCUGGGgUcCCA--UG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 131367 | 0.68 | 0.63303 |
Target: 5'- -gGAGCUCCCcaccGAGGCCUggcccaugaugCAGGGgGCg -3' miRNA: 3'- cgCUCGAGGGu---CUCUGGG-----------GUCCCaUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 105169 | 0.68 | 0.637042 |
Target: 5'- cCGAGC-CCCAGAgcaacgcgggcccacGACCCCAuaucGGGgACa -3' miRNA: 3'- cGCUCGaGGGUCU---------------CUGGGGU----CCCaUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 102359 | 0.68 | 0.643058 |
Target: 5'- -gGGGCcgCCgGGAGcACCCCGuGGUGCa -3' miRNA: 3'- cgCUCGa-GGgUCUC-UGGGGUcCCAUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 150878 | 0.68 | 0.643058 |
Target: 5'- cGCGGGCcagggCCCGGgcacgggccucGGGCCCCAGGcacgGCc -3' miRNA: 3'- -CGCUCGa----GGGUC-----------UCUGGGGUCCca--UG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 49351 | 0.68 | 0.643058 |
Target: 5'- cCGAGCgUCCCGGcAGcGCCCCGGGcccgaUGCg -3' miRNA: 3'- cGCUCG-AGGGUC-UC-UGGGGUCCc----AUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 17048 | 0.68 | 0.643058 |
Target: 5'- aCGAGCaCCCcGAacgacgGGCCCCGGGGUu- -3' miRNA: 3'- cGCUCGaGGGuCU------CUGGGGUCCCAug -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 59979 | 0.67 | 0.683011 |
Target: 5'- cGCGgcaccucucuGGC-CUCGGGGACCCgGGGG-ACg -3' miRNA: 3'- -CGC----------UCGaGGGUCUCUGGGgUCCCaUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 75368 | 0.67 | 0.702778 |
Target: 5'- cGCGGGUggccaucgCCCAGcucacGACCUUAGGGUcgGCu -3' miRNA: 3'- -CGCUCGa-------GGGUCu----CUGGGGUCCCA--UG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 74898 | 0.67 | 0.702778 |
Target: 5'- gGCGGGCuggucggaccUCCCcGAGGCCguUCGGGGgGCg -3' miRNA: 3'- -CGCUCG----------AGGGuCUCUGG--GGUCCCaUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 117655 | 0.67 | 0.712579 |
Target: 5'- cCGcGCUCCCgGGAGGCUCgCAGuGGUAg -3' miRNA: 3'- cGCuCGAGGG-UCUCUGGG-GUC-CCAUg -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 132729 | 0.67 | 0.722316 |
Target: 5'- cGCGAGCUggCCCGGcguGGCCUCGGcGGc-- -3' miRNA: 3'- -CGCUCGA--GGGUCu--CUGGGGUC-CCaug -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 129698 | 0.67 | 0.722316 |
Target: 5'- -gGAcGcCUCuCCGGAGGCCCgGGGGgcCa -3' miRNA: 3'- cgCU-C-GAG-GGUCUCUGGGgUCCCauG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 106705 | 0.67 | 0.722316 |
Target: 5'- cCGGGCcCCCGGGcGGCCCCc-GGUAUc -3' miRNA: 3'- cGCUCGaGGGUCU-CUGGGGucCCAUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 15846 | 0.66 | 0.741556 |
Target: 5'- aCGGGC-CCCuuuuGGGGCCgCGGGGgGCc -3' miRNA: 3'- cGCUCGaGGGu---CUCUGGgGUCCCaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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