miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5767 5' -59.3 NC_001806.1 + 7334 1.1 0.00116
Target:  5'- cGCGAGCUCCCAGAGACCCCAGGGUACc -3'
miRNA:   3'- -CGCUCGAGGGUCUCUGGGGUCCCAUG- -5'
5767 5' -59.3 NC_001806.1 + 19891 0.76 0.254668
Target:  5'- gGUGGGUUUCUgucgucGGAGGcCCCCGGGGUGCg -3'
miRNA:   3'- -CGCUCGAGGG------UCUCU-GGGGUCCCAUG- -5'
5767 5' -59.3 NC_001806.1 + 58080 0.75 0.305504
Target:  5'- cCGAGCUCCCggcugaaGGAGACCCCuGGcUAUg -3'
miRNA:   3'- cGCUCGAGGG-------UCUCUGGGGuCCcAUG- -5'
5767 5' -59.3 NC_001806.1 + 20396 0.75 0.306195
Target:  5'- gGCGGGCgggaCCGGGGGgCCCGGGG-ACg -3'
miRNA:   3'- -CGCUCGag--GGUCUCUgGGGUCCCaUG- -5'
5767 5' -59.3 NC_001806.1 + 32178 0.73 0.381306
Target:  5'- gGCGGuGCuUCUUAGAGACCgCCGGGGgACg -3'
miRNA:   3'- -CGCU-CG-AGGGUCUCUGG-GGUCCCaUG- -5'
5767 5' -59.3 NC_001806.1 + 110079 0.73 0.390284
Target:  5'- cGCGGGCggcgacguaacacggCCCAGAGGCCCCcuacGGUGg -3'
miRNA:   3'- -CGCUCGa--------------GGGUCUCUGGGGuc--CCAUg -5'
5767 5' -59.3 NC_001806.1 + 58055 0.73 0.397732
Target:  5'- gGCucGCUCCCAGAGGCCCgGGaGGn-- -3'
miRNA:   3'- -CGcuCGAGGGUCUCUGGGgUC-CCaug -5'
5767 5' -59.3 NC_001806.1 + 105118 0.72 0.403588
Target:  5'- gGCGggaggauuggggacAGCUUUCGGGGgcggccgugccGCCCCAGGGUGCc -3'
miRNA:   3'- -CGC--------------UCGAGGGUCUC-----------UGGGGUCCCAUG- -5'
5767 5' -59.3 NC_001806.1 + 93574 0.72 0.414606
Target:  5'- cGCGAcgccguucgGCggCCCGGGGGCCCCGGGaccgGCa -3'
miRNA:   3'- -CGCU---------CGa-GGGUCUCUGGGGUCCca--UG- -5'
5767 5' -59.3 NC_001806.1 + 102057 0.72 0.414606
Target:  5'- cCGAGUcggaCCCGGAGGCCCCAcGGGc-- -3'
miRNA:   3'- cGCUCGa---GGGUCUCUGGGGU-CCCaug -5'
5767 5' -59.3 NC_001806.1 + 77524 0.72 0.423206
Target:  5'- aGUGAGCggaggCCCGG-GGCCCCu-GGUGCu -3'
miRNA:   3'- -CGCUCGa----GGGUCuCUGGGGucCCAUG- -5'
5767 5' -59.3 NC_001806.1 + 100069 0.71 0.486231
Target:  5'- gGCGAcGCuuUCCCGacccccGGACCCCAGGGUc- -3'
miRNA:   3'- -CGCU-CG--AGGGUc-----UCUGGGGUCCCAug -5'
5767 5' -59.3 NC_001806.1 + 2672 0.71 0.495601
Target:  5'- cGCGGGCgccgCCguGuggcuGGGCCCCGGGGg-- -3'
miRNA:   3'- -CGCUCGa---GGguC-----UCUGGGGUCCCaug -5'
5767 5' -59.3 NC_001806.1 + 57072 0.7 0.524182
Target:  5'- cCGGGCUCCCcGAGACUCCacagaacaAGGGccGCu -3'
miRNA:   3'- cGCUCGAGGGuCUCUGGGG--------UCCCa-UG- -5'
5767 5' -59.3 NC_001806.1 + 2819 0.7 0.543581
Target:  5'- gGCGGGCUC----GGGCCCCGGGG-GCg -3'
miRNA:   3'- -CGCUCGAGggucUCUGGGGUCCCaUG- -5'
5767 5' -59.3 NC_001806.1 + 93895 0.7 0.552388
Target:  5'- cGCGGGaggccgCCCcgaagagGGGGACCCCGGGGc-- -3'
miRNA:   3'- -CGCUCga----GGG-------UCUCUGGGGUCCCaug -5'
5767 5' -59.3 NC_001806.1 + 2452 0.7 0.553369
Target:  5'- gGCG-GCcCCCGGcGGCCCCgugGGGGUGg -3'
miRNA:   3'- -CGCuCGaGGGUCuCUGGGG---UCCCAUg -5'
5767 5' -59.3 NC_001806.1 + 135394 0.69 0.573095
Target:  5'- uCGuGCUCCCAGAGgcgcgacaggcGCUCCAGGuccugggcGUACg -3'
miRNA:   3'- cGCuCGAGGGUCUC-----------UGGGGUCC--------CAUG- -5'
5767 5' -59.3 NC_001806.1 + 90322 0.69 0.583022
Target:  5'- cGUGGGUUCUCGcacgacGGGGCUCgGGGGUACc -3'
miRNA:   3'- -CGCUCGAGGGU------CUCUGGGgUCCCAUG- -5'
5767 5' -59.3 NC_001806.1 + 7271 0.69 0.583022
Target:  5'- cGCGuGUUCCCcGGGAgCCCcGGGUuccGCg -3'
miRNA:   3'- -CGCuCGAGGGuCUCUgGGGuCCCA---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.