Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5767 | 5' | -59.3 | NC_001806.1 | + | 2452 | 0.7 | 0.553369 |
Target: 5'- gGCG-GCcCCCGGcGGCCCCgugGGGGUGg -3' miRNA: 3'- -CGCuCGaGGGUCuCUGGGG---UCCCAUg -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 2672 | 0.71 | 0.495601 |
Target: 5'- cGCGGGCgccgCCguGuggcuGGGCCCCGGGGg-- -3' miRNA: 3'- -CGCUCGa---GGguC-----UCUGGGGUCCCaug -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 2819 | 0.7 | 0.543581 |
Target: 5'- gGCGGGCUC----GGGCCCCGGGG-GCg -3' miRNA: 3'- -CGCUCGAGggucUCUGGGGUCCCaUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 3550 | 0.66 | 0.741556 |
Target: 5'- gGCGGGCgcggCggaCAGccGCCCCAGGGcgGCg -3' miRNA: 3'- -CGCUCGa---Gg--GUCucUGGGGUCCCa-UG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 4123 | 0.69 | 0.612979 |
Target: 5'- uCGGGCgcccCCCAGAGGCCCgGGcGGc-- -3' miRNA: 3'- cGCUCGa---GGGUCUCUGGGgUC-CCaug -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 4361 | 0.66 | 0.751043 |
Target: 5'- uGCG-GC-CCgCGGAGGCCgCGGGGg-- -3' miRNA: 3'- -CGCuCGaGG-GUCUCUGGgGUCCCaug -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 7271 | 0.69 | 0.583022 |
Target: 5'- cGCGuGUUCCCcGGGAgCCCcGGGUuccGCg -3' miRNA: 3'- -CGCuCGAGGGuCUCUgGGGuCCCA---UG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 7334 | 1.1 | 0.00116 |
Target: 5'- cGCGAGCUCCCAGAGACCCCAGGGUACc -3' miRNA: 3'- -CGCUCGAGGGUCUCUGGGGUCCCAUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 15846 | 0.66 | 0.741556 |
Target: 5'- aCGGGC-CCCuuuuGGGGCCgCGGGGgGCc -3' miRNA: 3'- cGCUCGaGGGu---CUCUGGgGUCCCaUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 17048 | 0.68 | 0.643058 |
Target: 5'- aCGAGCaCCCcGAacgacgGGCCCCGGGGUu- -3' miRNA: 3'- cGCUCGaGGGuCU------CUGGGGUCCCAug -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 19891 | 0.76 | 0.254668 |
Target: 5'- gGUGGGUUUCUgucgucGGAGGcCCCCGGGGUGCg -3' miRNA: 3'- -CGCUCGAGGG------UCUCU-GGGGUCCCAUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 20396 | 0.75 | 0.306195 |
Target: 5'- gGCGGGCgggaCCGGGGGgCCCGGGG-ACg -3' miRNA: 3'- -CGCUCGag--GGUCUCUgGGGUCCCaUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 32178 | 0.73 | 0.381306 |
Target: 5'- gGCGGuGCuUCUUAGAGACCgCCGGGGgACg -3' miRNA: 3'- -CGCU-CG-AGGGUCUCUGG-GGUCCCaUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 41833 | 0.69 | 0.583022 |
Target: 5'- gGCGGGCg-UCAG-GGCCCCGGGcgcGUACg -3' miRNA: 3'- -CGCUCGagGGUCuCUGGGGUCC---CAUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 49351 | 0.68 | 0.643058 |
Target: 5'- cCGAGCgUCCCGGcAGcGCCCCGGGcccgaUGCg -3' miRNA: 3'- cGCUCG-AGGGUC-UC-UGGGGUCCc----AUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 57072 | 0.7 | 0.524182 |
Target: 5'- cCGGGCUCCCcGAGACUCCacagaacaAGGGccGCu -3' miRNA: 3'- cGCUCGAGGGuCUCUGGGG--------UCCCa-UG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 58055 | 0.73 | 0.397732 |
Target: 5'- gGCucGCUCCCAGAGGCCCgGGaGGn-- -3' miRNA: 3'- -CGcuCGAGGGUCUCUGGGgUC-CCaug -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 58080 | 0.75 | 0.305504 |
Target: 5'- cCGAGCUCCCggcugaaGGAGACCCCuGGcUAUg -3' miRNA: 3'- cGCUCGAGGG-------UCUCUGGGGuCCcAUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 59615 | 0.66 | 0.741556 |
Target: 5'- aGCGccGGggCCUuGGGGCCCCGgccGGGUACu -3' miRNA: 3'- -CGC--UCgaGGGuCUCUGGGGU---CCCAUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 59979 | 0.67 | 0.683011 |
Target: 5'- cGCGgcaccucucuGGC-CUCGGGGACCCgGGGG-ACg -3' miRNA: 3'- -CGC----------UCGaGGGUCUCUGGGgUCCCaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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