miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5767 5' -59.3 NC_001806.1 + 60090 0.69 0.592982
Target:  5'- cGCGuuCUCC---GGGCCCUGGGGUACg -3'
miRNA:   3'- -CGCucGAGGgucUCUGGGGUCCCAUG- -5'
5767 5' -59.3 NC_001806.1 + 67126 0.66 0.769707
Target:  5'- cGCGugcacccGCUCUCGGcucgccccGACCCCAGGGc-- -3'
miRNA:   3'- -CGCu------CGAGGGUCu-------CUGGGGUCCCaug -5'
5767 5' -59.3 NC_001806.1 + 71062 0.66 0.751043
Target:  5'- aCGAGCcgucgcgaCCUAGGGGCCUgGGGGgACu -3'
miRNA:   3'- cGCUCGa-------GGGUCUCUGGGgUCCCaUG- -5'
5767 5' -59.3 NC_001806.1 + 71262 0.68 0.623001
Target:  5'- -gGAGuCUCCCAGGGACCUgGaGGUccGCg -3'
miRNA:   3'- cgCUC-GAGGGUCUCUGGGgUcCCA--UG- -5'
5767 5' -59.3 NC_001806.1 + 71993 0.66 0.7879
Target:  5'- uCGAGCUCCCcaacuuccucGAGuACCCaGGGGcGCg -3'
miRNA:   3'- cGCUCGAGGGu---------CUC-UGGGgUCCCaUG- -5'
5767 5' -59.3 NC_001806.1 + 74728 0.66 0.778866
Target:  5'- cGCGcGCUCCCuGGAGgcaauGCUCgAGGGaGCg -3'
miRNA:   3'- -CGCuCGAGGG-UCUC-----UGGGgUCCCaUG- -5'
5767 5' -59.3 NC_001806.1 + 74898 0.67 0.702778
Target:  5'- gGCGGGCuggucggaccUCCCcGAGGCCguUCGGGGgGCg -3'
miRNA:   3'- -CGCUCG----------AGGGuCUCUGG--GGUCCCaUG- -5'
5767 5' -59.3 NC_001806.1 + 75368 0.67 0.702778
Target:  5'- cGCGGGUggccaucgCCCAGcucacGACCUUAGGGUcgGCu -3'
miRNA:   3'- -CGCUCGa-------GGGUCu----CUGGGGUCCCA--UG- -5'
5767 5' -59.3 NC_001806.1 + 77524 0.72 0.423206
Target:  5'- aGUGAGCggaggCCCGG-GGCCCCu-GGUGCu -3'
miRNA:   3'- -CGCUCGa----GGGUCuCUGGGGucCCAUG- -5'
5767 5' -59.3 NC_001806.1 + 81450 0.66 0.7879
Target:  5'- cGCGGagaaaCUCCCGcacGGCCCCuuGGGUGCc -3'
miRNA:   3'- -CGCUc----GAGGGUcu-CUGGGGu-CCCAUG- -5'
5767 5' -59.3 NC_001806.1 + 90322 0.69 0.583022
Target:  5'- cGUGGGUUCUCGcacgacGGGGCUCgGGGGUACc -3'
miRNA:   3'- -CGCUCGAGGGU------CUCUGGGgUCCCAUG- -5'
5767 5' -59.3 NC_001806.1 + 92388 0.66 0.769707
Target:  5'- gGCGAcGUUgCCCGcGuGACCCUGGGGUu- -3'
miRNA:   3'- -CGCU-CGA-GGGU-CuCUGGGGUCCCAug -5'
5767 5' -59.3 NC_001806.1 + 93574 0.72 0.414606
Target:  5'- cGCGAcgccguucgGCggCCCGGGGGCCCCGGGaccgGCa -3'
miRNA:   3'- -CGCU---------CGa-GGGUCUCUGGGGUCCca--UG- -5'
5767 5' -59.3 NC_001806.1 + 93895 0.7 0.552388
Target:  5'- cGCGGGaggccgCCCcgaagagGGGGACCCCGGGGc-- -3'
miRNA:   3'- -CGCUCga----GGG-------UCUCUGGGGUCCCaug -5'
5767 5' -59.3 NC_001806.1 + 95389 0.66 0.751043
Target:  5'- uGgGAGCUCCCGGGGGC---GGGG-GCg -3'
miRNA:   3'- -CgCUCGAGGGUCUCUGgggUCCCaUG- -5'
5767 5' -59.3 NC_001806.1 + 99973 0.68 0.623001
Target:  5'- cGCGcGGCgcgCCUcGAGccuCCCCGGGGUAg -3'
miRNA:   3'- -CGC-UCGa--GGGuCUCu--GGGGUCCCAUg -5'
5767 5' -59.3 NC_001806.1 + 100069 0.71 0.486231
Target:  5'- gGCGAcGCuuUCCCGacccccGGACCCCAGGGUc- -3'
miRNA:   3'- -CGCU-CG--AGGGUc-----UCUGGGGUCCCAug -5'
5767 5' -59.3 NC_001806.1 + 102057 0.72 0.414606
Target:  5'- cCGAGUcggaCCCGGAGGCCCCAcGGGc-- -3'
miRNA:   3'- cGCUCGa---GGGUCUCUGGGGU-CCCaug -5'
5767 5' -59.3 NC_001806.1 + 102359 0.68 0.643058
Target:  5'- -gGGGCcgCCgGGAGcACCCCGuGGUGCa -3'
miRNA:   3'- cgCUCGa-GGgUCUC-UGGGGUcCCAUG- -5'
5767 5' -59.3 NC_001806.1 + 105118 0.72 0.403588
Target:  5'- gGCGggaggauuggggacAGCUUUCGGGGgcggccgugccGCCCCAGGGUGCc -3'
miRNA:   3'- -CGC--------------UCGAGGGUCUC-----------UGGGGUCCCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.