miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5767 5' -59.3 NC_001806.1 + 150878 0.68 0.643058
Target:  5'- cGCGGGCcagggCCCGGgcacgggccucGGGCCCCAGGcacgGCc -3'
miRNA:   3'- -CGCUCGa----GGGUC-----------UCUGGGGUCCca--UG- -5'
5767 5' -59.3 NC_001806.1 + 150811 0.66 0.751043
Target:  5'- cGgGAGCUCCgCGGaAGACCCaggccgccucGGGUGu -3'
miRNA:   3'- -CgCUCGAGG-GUC-UCUGGGgu--------CCCAUg -5'
5767 5' -59.3 NC_001806.1 + 147663 0.69 0.60297
Target:  5'- gGCGGGCggCCGGcuccGCCCCGGGGgcCg -3'
miRNA:   3'- -CGCUCGagGGUCuc--UGGGGUCCCauG- -5'
5767 5' -59.3 NC_001806.1 + 135394 0.69 0.573095
Target:  5'- uCGuGCUCCCAGAGgcgcgacaggcGCUCCAGGuccugggcGUACg -3'
miRNA:   3'- cGCuCGAGGGUCUC-----------UGGGGUCC--------CAUG- -5'
5767 5' -59.3 NC_001806.1 + 132729 0.67 0.722316
Target:  5'- cGCGAGCUggCCCGGcguGGCCUCGGcGGc-- -3'
miRNA:   3'- -CGCUCGA--GGGUCu--CUGGGGUC-CCaug -5'
5767 5' -59.3 NC_001806.1 + 131367 0.68 0.63303
Target:  5'- -gGAGCUCCCcaccGAGGCCUggcccaugaugCAGGGgGCg -3'
miRNA:   3'- cgCUCGAGGGu---CUCUGGG-----------GUCCCaUG- -5'
5767 5' -59.3 NC_001806.1 + 129698 0.67 0.722316
Target:  5'- -gGAcGcCUCuCCGGAGGCCCgGGGGgcCa -3'
miRNA:   3'- cgCU-C-GAG-GGUCUCUGGGgUCCCauG- -5'
5767 5' -59.3 NC_001806.1 + 123178 0.66 0.787002
Target:  5'- cGCGAGaCUaUCAGAGcaccccccgggucGCCCgCAGGGUGg -3'
miRNA:   3'- -CGCUC-GAgGGUCUC-------------UGGG-GUCCCAUg -5'
5767 5' -59.3 NC_001806.1 + 117967 0.66 0.778866
Target:  5'- aGCGAcGCcggUCCCGGAGGCUC--GGGUGu -3'
miRNA:   3'- -CGCU-CG---AGGGUCUCUGGGguCCCAUg -5'
5767 5' -59.3 NC_001806.1 + 117655 0.67 0.712579
Target:  5'- cCGcGCUCCCgGGAGGCUCgCAGuGGUAg -3'
miRNA:   3'- cGCuCGAGGG-UCUCUGGG-GUC-CCAUg -5'
5767 5' -59.3 NC_001806.1 + 110079 0.73 0.390284
Target:  5'- cGCGGGCggcgacguaacacggCCCAGAGGCCCCcuacGGUGg -3'
miRNA:   3'- -CGCUCGa--------------GGGUCUCUGGGGuc--CCAUg -5'
5767 5' -59.3 NC_001806.1 + 106705 0.67 0.722316
Target:  5'- cCGGGCcCCCGGGcGGCCCCc-GGUAUc -3'
miRNA:   3'- cGCUCGaGGGUCU-CUGGGGucCCAUG- -5'
5767 5' -59.3 NC_001806.1 + 105169 0.68 0.637042
Target:  5'- cCGAGC-CCCAGAgcaacgcgggcccacGACCCCAuaucGGGgACa -3'
miRNA:   3'- cGCUCGaGGGUCU---------------CUGGGGU----CCCaUG- -5'
5767 5' -59.3 NC_001806.1 + 105118 0.72 0.403588
Target:  5'- gGCGggaggauuggggacAGCUUUCGGGGgcggccgugccGCCCCAGGGUGCc -3'
miRNA:   3'- -CGC--------------UCGAGGGUCUC-----------UGGGGUCCCAUG- -5'
5767 5' -59.3 NC_001806.1 + 102359 0.68 0.643058
Target:  5'- -gGGGCcgCCgGGAGcACCCCGuGGUGCa -3'
miRNA:   3'- cgCUCGa-GGgUCUC-UGGGGUcCCAUG- -5'
5767 5' -59.3 NC_001806.1 + 102057 0.72 0.414606
Target:  5'- cCGAGUcggaCCCGGAGGCCCCAcGGGc-- -3'
miRNA:   3'- cGCUCGa---GGGUCUCUGGGGU-CCCaug -5'
5767 5' -59.3 NC_001806.1 + 100069 0.71 0.486231
Target:  5'- gGCGAcGCuuUCCCGacccccGGACCCCAGGGUc- -3'
miRNA:   3'- -CGCU-CG--AGGGUc-----UCUGGGGUCCCAug -5'
5767 5' -59.3 NC_001806.1 + 99973 0.68 0.623001
Target:  5'- cGCGcGGCgcgCCUcGAGccuCCCCGGGGUAg -3'
miRNA:   3'- -CGC-UCGa--GGGuCUCu--GGGGUCCCAUg -5'
5767 5' -59.3 NC_001806.1 + 95389 0.66 0.751043
Target:  5'- uGgGAGCUCCCGGGGGC---GGGG-GCg -3'
miRNA:   3'- -CgCUCGAGGGUCUCUGgggUCCCaUG- -5'
5767 5' -59.3 NC_001806.1 + 93895 0.7 0.552388
Target:  5'- cGCGGGaggccgCCCcgaagagGGGGACCCCGGGGc-- -3'
miRNA:   3'- -CGCUCga----GGG-------UCUCUGGGGUCCCaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.