Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5768 | 3' | -56 | NC_001806.1 | + | 7099 | 1.08 | 0.003817 |
Target: 5'- gGUGUUCACGCACCUCGAGGACACCCGc -3' miRNA: 3'- -CACAAGUGCGUGGAGCUCCUGUGGGC- -5' |
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5768 | 3' | -56 | NC_001806.1 | + | 71002 | 0.79 | 0.281065 |
Target: 5'- aUGgcgCAUGCGCC-CGAGGACGCCCc -3' miRNA: 3'- cACaa-GUGCGUGGaGCUCCUGUGGGc -5' |
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5768 | 3' | -56 | NC_001806.1 | + | 24454 | 0.78 | 0.322686 |
Target: 5'- cGUGcgCACGCGCUUCGGcccGGACACgCCGg -3' miRNA: 3'- -CACaaGUGCGUGGAGCU---CCUGUG-GGC- -5' |
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5768 | 3' | -56 | NC_001806.1 | + | 54711 | 0.76 | 0.401848 |
Target: 5'- ---gUCACGC-CCUCGGGGACGCagCCGg -3' miRNA: 3'- cacaAGUGCGuGGAGCUCCUGUG--GGC- -5' |
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5768 | 3' | -56 | NC_001806.1 | + | 23507 | 0.7 | 0.712478 |
Target: 5'- cGUG-UCGCGCcgGCCcgcCGAGGGC-CCCGa -3' miRNA: 3'- -CACaAGUGCG--UGGa--GCUCCUGuGGGC- -5' |
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5768 | 3' | -56 | NC_001806.1 | + | 30402 | 0.7 | 0.741901 |
Target: 5'- -gGUggCGCGCGgCUCGGGGGgGCCgGg -3' miRNA: 3'- caCAa-GUGCGUgGAGCUCCUgUGGgC- -5' |
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5768 | 3' | -56 | NC_001806.1 | + | 152081 | 0.7 | 0.741901 |
Target: 5'- -cGcgCGCGCGCCcgCGGGGG-GCCCGg -3' miRNA: 3'- caCaaGUGCGUGGa-GCUCCUgUGGGC- -5' |
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5768 | 3' | -56 | NC_001806.1 | + | 371 | 0.7 | 0.741901 |
Target: 5'- -cGcgCGCGCGCCcgCGGGGG-GCCCGg -3' miRNA: 3'- caCaaGUGCGUGGa-GCUCCUgUGGGC- -5' |
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5768 | 3' | -56 | NC_001806.1 | + | 21268 | 0.7 | 0.751531 |
Target: 5'- ----cCACG-ACCUCGAcGACGCCCGg -3' miRNA: 3'- cacaaGUGCgUGGAGCUcCUGUGGGC- -5' |
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5768 | 3' | -56 | NC_001806.1 | + | 38540 | 0.69 | 0.77976 |
Target: 5'- gGUGgUgGCGCACCgguagCGAGcGACcggGCCCGa -3' miRNA: 3'- -CACaAgUGCGUGGa----GCUC-CUG---UGGGC- -5' |
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5768 | 3' | -56 | NC_001806.1 | + | 134173 | 0.69 | 0.788919 |
Target: 5'- -gGcgCGCGCACCUCcuccGACGCCCa -3' miRNA: 3'- caCaaGUGCGUGGAGcuc-CUGUGGGc -5' |
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5768 | 3' | -56 | NC_001806.1 | + | 31226 | 0.69 | 0.797939 |
Target: 5'- cGUGgggaaCAUGCugUUCGAccaGGGCACCCu -3' miRNA: 3'- -CACaa---GUGCGugGAGCU---CCUGUGGGc -5' |
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5768 | 3' | -56 | NC_001806.1 | + | 133300 | 0.68 | 0.815525 |
Target: 5'- cUGUgcCugGC-CCUCGAGGgcgucuACACCCa -3' miRNA: 3'- cACAa-GugCGuGGAGCUCC------UGUGGGc -5' |
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5768 | 3' | -56 | NC_001806.1 | + | 23021 | 0.68 | 0.824074 |
Target: 5'- gGUGcUCAUGCGCCUgCGcGGGgACCUGc -3' miRNA: 3'- -CACaAGUGCGUGGA-GCuCCUgUGGGC- -5' |
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5768 | 3' | -56 | NC_001806.1 | + | 143580 | 0.68 | 0.840647 |
Target: 5'- ----cCACcCACCUCG-GGAUACCCa -3' miRNA: 3'- cacaaGUGcGUGGAGCuCCUGUGGGc -5' |
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5768 | 3' | -56 | NC_001806.1 | + | 4405 | 0.68 | 0.848655 |
Target: 5'- uUGggCGCG-GCCUCGgagaggggGGGugGCCCGg -3' miRNA: 3'- cACaaGUGCgUGGAGC--------UCCugUGGGC- -5' |
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5768 | 3' | -56 | NC_001806.1 | + | 128698 | 0.67 | 0.856469 |
Target: 5'- ----cCGCGCACCUCGGccguGGAguuCACCCc -3' miRNA: 3'- cacaaGUGCGUGGAGCU----CCU---GUGGGc -5' |
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5768 | 3' | -56 | NC_001806.1 | + | 69976 | 0.67 | 0.856469 |
Target: 5'- -cGUUCugGC-CCugguggUCGGGGACGCgCUGa -3' miRNA: 3'- caCAAGugCGuGG------AGCUCCUGUG-GGC- -5' |
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5768 | 3' | -56 | NC_001806.1 | + | 21312 | 0.67 | 0.864082 |
Target: 5'- -cGggCAcCGaCGCCggCGAGGACGCCgGg -3' miRNA: 3'- caCaaGU-GC-GUGGa-GCUCCUGUGGgC- -5' |
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5768 | 3' | -56 | NC_001806.1 | + | 100718 | 0.67 | 0.871488 |
Target: 5'- cGUGUgggUCA-GCGCCUCcacgccGGGCGCCCa -3' miRNA: 3'- -CACA---AGUgCGUGGAGcu----CCUGUGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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