miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5768 3' -56 NC_001806.1 + 371 0.7 0.741901
Target:  5'- -cGcgCGCGCGCCcgCGGGGG-GCCCGg -3'
miRNA:   3'- caCaaGUGCGUGGa-GCUCCUgUGGGC- -5'
5768 3' -56 NC_001806.1 + 4405 0.68 0.848655
Target:  5'- uUGggCGCG-GCCUCGgagaggggGGGugGCCCGg -3'
miRNA:   3'- cACaaGUGCgUGGAGC--------UCCugUGGGC- -5'
5768 3' -56 NC_001806.1 + 6066 0.66 0.922731
Target:  5'- ----cCGCGCcgGCCcCGGGGGCggGCCCGg -3'
miRNA:   3'- cacaaGUGCG--UGGaGCUCCUG--UGGGC- -5'
5768 3' -56 NC_001806.1 + 7099 1.08 0.003817
Target:  5'- gGUGUUCACGCACCUCGAGGACACCCGc -3'
miRNA:   3'- -CACAAGUGCGUGGAGCUCCUGUGGGC- -5'
5768 3' -56 NC_001806.1 + 21268 0.7 0.751531
Target:  5'- ----cCACG-ACCUCGAcGACGCCCGg -3'
miRNA:   3'- cacaaGUGCgUGGAGCUcCUGUGGGC- -5'
5768 3' -56 NC_001806.1 + 21312 0.67 0.864082
Target:  5'- -cGggCAcCGaCGCCggCGAGGACGCCgGg -3'
miRNA:   3'- caCaaGU-GC-GUGGa-GCUCCUGUGGgC- -5'
5768 3' -56 NC_001806.1 + 23021 0.68 0.824074
Target:  5'- gGUGcUCAUGCGCCUgCGcGGGgACCUGc -3'
miRNA:   3'- -CACaAGUGCGUGGA-GCuCCUgUGGGC- -5'
5768 3' -56 NC_001806.1 + 23507 0.7 0.712478
Target:  5'- cGUG-UCGCGCcgGCCcgcCGAGGGC-CCCGa -3'
miRNA:   3'- -CACaAGUGCG--UGGa--GCUCCUGuGGGC- -5'
5768 3' -56 NC_001806.1 + 24454 0.78 0.322686
Target:  5'- cGUGcgCACGCGCUUCGGcccGGACACgCCGg -3'
miRNA:   3'- -CACaaGUGCGUGGAGCU---CCUGUG-GGC- -5'
5768 3' -56 NC_001806.1 + 30402 0.7 0.741901
Target:  5'- -gGUggCGCGCGgCUCGGGGGgGCCgGg -3'
miRNA:   3'- caCAa-GUGCGUgGAGCUCCUgUGGgC- -5'
5768 3' -56 NC_001806.1 + 31226 0.69 0.797939
Target:  5'- cGUGgggaaCAUGCugUUCGAccaGGGCACCCu -3'
miRNA:   3'- -CACaa---GUGCGugGAGCU---CCUGUGGGc -5'
5768 3' -56 NC_001806.1 + 38540 0.69 0.77976
Target:  5'- gGUGgUgGCGCACCgguagCGAGcGACcggGCCCGa -3'
miRNA:   3'- -CACaAgUGCGUGGa----GCUC-CUG---UGGGC- -5'
5768 3' -56 NC_001806.1 + 52066 0.66 0.917135
Target:  5'- -cGUUCGCGCGCCaUCu-GGACcgggguCCCa -3'
miRNA:   3'- caCAAGUGCGUGG-AGcuCCUGu-----GGGc -5'
5768 3' -56 NC_001806.1 + 54711 0.76 0.401848
Target:  5'- ---gUCACGC-CCUCGGGGACGCagCCGg -3'
miRNA:   3'- cacaAGUGCGuGGAGCUCCUGUG--GGC- -5'
5768 3' -56 NC_001806.1 + 69976 0.67 0.856469
Target:  5'- -cGUUCugGC-CCugguggUCGGGGACGCgCUGa -3'
miRNA:   3'- caCAAGugCGuGG------AGCUCCUGUG-GGC- -5'
5768 3' -56 NC_001806.1 + 70127 0.66 0.922731
Target:  5'- cUGggCGCGCugaucacccuCCUCGAaccGGcCGCCCGg -3'
miRNA:   3'- cACaaGUGCGu---------GGAGCU---CCuGUGGGC- -5'
5768 3' -56 NC_001806.1 + 71002 0.79 0.281065
Target:  5'- aUGgcgCAUGCGCC-CGAGGACGCCCc -3'
miRNA:   3'- cACaa-GUGCGUGGaGCUCCUGUGGGc -5'
5768 3' -56 NC_001806.1 + 76854 0.66 0.911303
Target:  5'- -aGggCGCGCGCCUgcAGGcgcucuucgACACCCGu -3'
miRNA:   3'- caCaaGUGCGUGGAgcUCC---------UGUGGGC- -5'
5768 3' -56 NC_001806.1 + 91658 0.66 0.917135
Target:  5'- -cGcUCAUGCGCCUCc-GGGCGCgCCa -3'
miRNA:   3'- caCaAGUGCGUGGAGcuCCUGUG-GGc -5'
5768 3' -56 NC_001806.1 + 100718 0.67 0.871488
Target:  5'- cGUGUgggUCA-GCGCCUCcacgccGGGCGCCCa -3'
miRNA:   3'- -CACA---AGUgCGUGGAGcu----CCUGUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.