miRNA display CGI


Results 21 - 37 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5768 5' -59.5 NC_001806.1 + 50947 0.68 0.663082
Target:  5'- cCCGGGCCCCCGUGucCGGGa------ -3'
miRNA:   3'- aGGCCUGGGGGCGUu-GCCCcacuauu -5'
5768 5' -59.5 NC_001806.1 + 55325 0.67 0.722315
Target:  5'- aCCaGGAguCCCCCGgGugGGgcGGUGAUGu -3'
miRNA:   3'- aGG-CCU--GGGGGCgUugCC--CCACUAUu -5'
5768 5' -59.5 NC_001806.1 + 55972 0.67 0.702777
Target:  5'- -aCGGACCaCCGgAugGGGGUGu--- -3'
miRNA:   3'- agGCCUGGgGGCgUugCCCCACuauu -5'
5768 5' -59.5 NC_001806.1 + 72538 0.7 0.54358
Target:  5'- -gUGGGCCCCCGgGAgGGGGUa---- -3'
miRNA:   3'- agGCCUGGGGGCgUUgCCCCAcuauu -5'
5768 5' -59.5 NC_001806.1 + 77933 0.66 0.778866
Target:  5'- gCUGGGCCCagCUGgAAUGGGGgGGUGAc -3'
miRNA:   3'- aGGCCUGGG--GGCgUUGCCCCaCUAUU- -5'
5768 5' -59.5 NC_001806.1 + 85412 0.67 0.712579
Target:  5'- cCCGGACCCCacuuACGGGGg----- -3'
miRNA:   3'- aGGCCUGGGGgcguUGCCCCacuauu -5'
5768 5' -59.5 NC_001806.1 + 85748 0.66 0.760429
Target:  5'- gUCCGGAgCCgCGCGGCcacgucguccggGGGGUGc--- -3'
miRNA:   3'- -AGGCCUgGGgGCGUUG------------CCCCACuauu -5'
5768 5' -59.5 NC_001806.1 + 96376 0.68 0.663082
Target:  5'- gCCaGGgcGCCCCCGCG-CGGGGgcgccGGUGGu -3'
miRNA:   3'- aGG-CC--UGGGGGCGUuGCCCCa----CUAUU- -5'
5768 5' -59.5 NC_001806.1 + 96546 0.69 0.573095
Target:  5'- cCUGGcGCCCCCcCAACGGGG-GAc-- -3'
miRNA:   3'- aGGCC-UGGGGGcGUUGCCCCaCUauu -5'
5768 5' -59.5 NC_001806.1 + 101482 0.67 0.712579
Target:  5'- gCCGGGCCgggacuggagCCCGCcguuuACGGGGU-AUGAc -3'
miRNA:   3'- aGGCCUGG----------GGGCGu----UGCCCCAcUAUU- -5'
5768 5' -59.5 NC_001806.1 + 119598 0.69 0.573095
Target:  5'- gUCUGGAgCCCCC-CGGCGGGGg----- -3'
miRNA:   3'- -AGGCCU-GGGGGcGUUGCCCCacuauu -5'
5768 5' -59.5 NC_001806.1 + 132028 0.68 0.623001
Target:  5'- cUCGGACCCaCGC-ACGGgacuGGUGGUGAa -3'
miRNA:   3'- aGGCCUGGGgGCGuUGCC----CCACUAUU- -5'
5768 5' -59.5 NC_001806.1 + 133186 0.68 0.643058
Target:  5'- -gUGGACCCCCaagacgcggauGCGGCuuccGGGGUGAUc- -3'
miRNA:   3'- agGCCUGGGGG-----------CGUUG----CCCCACUAuu -5'
5768 5' -59.5 NC_001806.1 + 140955 0.7 0.524181
Target:  5'- uUCCGGGCCCCCGUGuaaagguUGGucaGGUGAg-- -3'
miRNA:   3'- -AGGCCUGGGGGCGUu------GCC---CCACUauu -5'
5768 5' -59.5 NC_001806.1 + 143603 0.67 0.683011
Target:  5'- cCCGGuCCCCCGUucccCGGGGg----- -3'
miRNA:   3'- aGGCCuGGGGGCGuu--GCCCCacuauu -5'
5768 5' -59.5 NC_001806.1 + 144599 0.75 0.279488
Target:  5'- cUCCGGGCCCCCcuGCAGcCGGGGcGGc-- -3'
miRNA:   3'- -AGGCCUGGGGG--CGUU-GCCCCaCUauu -5'
5768 5' -59.5 NC_001806.1 + 147083 0.69 0.590987
Target:  5'- uUCCGGgcacacuuccucgGCCCCCGCGgcccagaagcagcGCGGGGgccGAg-- -3'
miRNA:   3'- -AGGCC-------------UGGGGGCGU-------------UGCCCCa--CUauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.