Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5779 | 3' | -54 | NC_001806.1 | + | 3718 | 0.7 | 0.79921 |
Target: 5'- ------cGCCAACAGgggcgcguaGGCGCGGCGCAg -3' miRNA: 3'- uccacuuUGGUUGUC---------UCGUGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 90989 | 0.7 | 0.79921 |
Target: 5'- aGGGUaAGACCccGCGGGGCG-GGCGCGa -3' miRNA: 3'- -UCCAcUUUGGu-UGUCUCGUgCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 34300 | 0.7 | 0.79921 |
Target: 5'- gGGGUuu-AgCGGCGGGGgGCGGCGCGc -3' miRNA: 3'- -UCCAcuuUgGUUGUCUCgUGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 94069 | 0.7 | 0.816353 |
Target: 5'- cAGGUGcAGACCuauguguuucaGAUAGAGCugcuccgGCGGUGCGa -3' miRNA: 3'- -UCCAC-UUUGG-----------UUGUCUCG-------UGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 75212 | 0.7 | 0.817238 |
Target: 5'- cGGUGGAugCGGCcGuGCG-GGCGCAc -3' miRNA: 3'- uCCACUUugGUUGuCuCGUgCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 55233 | 0.7 | 0.817238 |
Target: 5'- cGGUGAcaGAauaCAACGGAGgGuCGGCGCc -3' miRNA: 3'- uCCACU--UUg--GUUGUCUCgU-GCCGCGu -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 151432 | 0.69 | 0.825993 |
Target: 5'- gGGGgcccACCGGCGGGGgGCGGCgGCGg -3' miRNA: 3'- -UCCacuuUGGUUGUCUCgUGCCG-CGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 1944 | 0.69 | 0.842939 |
Target: 5'- nAGGUcccgcgccGCCGGcCAGcGCACGGCGCAc -3' miRNA: 3'- -UCCAcuu-----UGGUU-GUCuCGUGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 10092 | 0.69 | 0.850307 |
Target: 5'- cAGGcGAGAcguCCAcguacucGCGGcGCACGGCGCGu -3' miRNA: 3'- -UCCaCUUU---GGU-------UGUCuCGUGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 20633 | 0.69 | 0.851115 |
Target: 5'- gGGGUucGACCAACGGGcCGCGGC-CAc -3' miRNA: 3'- -UCCAcuUUGGUUGUCUcGUGCCGcGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 128247 | 0.69 | 0.858296 |
Target: 5'- cAGGaaGAcgcCCAACAGcaaggcguuugucAGCACGGCGCGa -3' miRNA: 3'- -UCCa-CUuu-GGUUGUC-------------UCGUGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 104681 | 0.69 | 0.859083 |
Target: 5'- aGGGUGAGauAUCGGcCGGGGaCGCGGCGg- -3' miRNA: 3'- -UCCACUU--UGGUU-GUCUC-GUGCCGCgu -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 136900 | 0.69 | 0.859083 |
Target: 5'- gGGGUGAAccuuuacCCAGCcguccucgggGGAGCACaGCGCu -3' miRNA: 3'- -UCCACUUu------GGUUG----------UCUCGUGcCGCGu -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 95297 | 0.69 | 0.859083 |
Target: 5'- gGGGgcggGggGCgCGGCGGAcGCgcccaaggGCGGCGCGg -3' miRNA: 3'- -UCCa---CuuUG-GUUGUCU-CG--------UGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 112547 | 0.68 | 0.866072 |
Target: 5'- uGGUccugaacGggGCCAACcuGGuCACGGCGCu -3' miRNA: 3'- uCCA-------CuuUGGUUGucUC-GUGCCGCGu -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 21772 | 0.68 | 0.866837 |
Target: 5'- cGGGcGggGuCCGuc-GAGCGCGGCGCc -3' miRNA: 3'- -UCCaCuuU-GGUuguCUCGUGCCGCGu -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 76723 | 0.68 | 0.866837 |
Target: 5'- uGGUG-GACCAGaCGGAGaa-GGCGCGc -3' miRNA: 3'- uCCACuUUGGUU-GUCUCgugCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 21208 | 0.68 | 0.866837 |
Target: 5'- cGGGUGggGCgcggaGACGGAGgAgGGCGgGg -3' miRNA: 3'- -UCCACuuUGg----UUGUCUCgUgCCGCgU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 57166 | 0.68 | 0.874369 |
Target: 5'- gGGGUGcgcGCauaaAGCccAGCACGGCGCAc -3' miRNA: 3'- -UCCACuu-UGg---UUGucUCGUGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 36228 | 0.68 | 0.874369 |
Target: 5'- --cUGGAGCUGAUGGAGCGCaGGUGCu -3' miRNA: 3'- uccACUUUGGUUGUCUCGUG-CCGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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