Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5779 | 3' | -54 | NC_001806.1 | + | 23952 | 0.68 | 0.874369 |
Target: 5'- uGGG-GggGCCGccggagugguccGCcGAGCGCGGCGg- -3' miRNA: 3'- -UCCaCuuUGGU------------UGuCUCGUGCCGCgu -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 24994 | 0.73 | 0.627181 |
Target: 5'- gGGGUGcuguaacGGGCCGggACGGGGCGgGGCGCu -3' miRNA: 3'- -UCCAC-------UUUGGU--UGUCUCGUgCCGCGu -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 25486 | 0.67 | 0.925551 |
Target: 5'- gAGGUaGAGAugcccgaacccccCCGAgGGAGCGCGGgaCGCGc -3' miRNA: 3'- -UCCA-CUUU-------------GGUUgUCUCGUGCC--GCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 31754 | 0.68 | 0.895585 |
Target: 5'- uGGUGuuAACC-ACAGAGCcGCGGCcCGg -3' miRNA: 3'- uCCACu-UUGGuUGUCUCG-UGCCGcGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 33281 | 0.67 | 0.930931 |
Target: 5'- cGGG-GAaaacgaaaaaacaGACCAGCGGccGGC-CGGCGCu -3' miRNA: 3'- -UCCaCU-------------UUGGUUGUC--UCGuGCCGCGu -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 34300 | 0.7 | 0.79921 |
Target: 5'- gGGGUuu-AgCGGCGGGGgGCGGCGCGc -3' miRNA: 3'- -UCCAcuuUgGUUGUCUCgUGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 36228 | 0.68 | 0.874369 |
Target: 5'- --cUGGAGCUGAUGGAGCGCaGGUGCu -3' miRNA: 3'- uccACUUUGGUUGUCUCGUG-CCGCGu -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 39750 | 0.67 | 0.902181 |
Target: 5'- cAGGUGGGACCuggaAGGGCACGacccuaccCGCGa -3' miRNA: 3'- -UCCACUUUGGuug-UCUCGUGCc-------GCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 40014 | 0.7 | 0.770044 |
Target: 5'- gAGGUGcugcaggGAACgGACGgcGAGCAUGGCGUg -3' miRNA: 3'- -UCCAC-------UUUGgUUGU--CUCGUGCCGCGu -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 45331 | 0.67 | 0.914637 |
Target: 5'- cGGGcgcgaUGGGAUCGGgGGcGCGCGGUGCGa -3' miRNA: 3'- -UCC-----ACUUUGGUUgUCuCGUGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 51248 | 0.67 | 0.931456 |
Target: 5'- cGGGcGucACCAugcagcgcCGGAcGCGCGGCGCGa -3' miRNA: 3'- -UCCaCuuUGGUu-------GUCU-CGUGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 52609 | 0.79 | 0.325964 |
Target: 5'- gGGGUGGGACCuguCGGgaaaagauucagcgGGCGCGGCGCGa -3' miRNA: 3'- -UCCACUUUGGuu-GUC--------------UCGUGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 55233 | 0.7 | 0.817238 |
Target: 5'- cGGUGAcaGAauaCAACGGAGgGuCGGCGCc -3' miRNA: 3'- uCCACU--UUg--GUUGUCUCgU-GCCGCGu -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 57166 | 0.68 | 0.874369 |
Target: 5'- gGGGUGcgcGCauaaAGCccAGCACGGCGCAc -3' miRNA: 3'- -UCCACuu-UGg---UUGucUCGUGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 65916 | 0.66 | 0.954513 |
Target: 5'- gGGGaGGGACgCAagcucACAgGAGCACGGCGa- -3' miRNA: 3'- -UCCaCUUUG-GU-----UGU-CUCGUGCCGCgu -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 67239 | 0.66 | 0.936562 |
Target: 5'- cAGGUGAGGCagguCGGCGGGGUgccGCaGCGCc -3' miRNA: 3'- -UCCACUUUG----GUUGUCUCG---UGcCGCGu -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 67780 | 0.68 | 0.895585 |
Target: 5'- cGGUGGguuguguuGGCCGACuG-GCcCGGCGCGu -3' miRNA: 3'- uCCACU--------UUGGUUGuCuCGuGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 71698 | 0.66 | 0.936562 |
Target: 5'- cGGGUcucuGGCCAGCAGGGCacauaugaucGCGG-GCAc -3' miRNA: 3'- -UCCAcu--UUGGUUGUCUCG----------UGCCgCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 75212 | 0.7 | 0.817238 |
Target: 5'- cGGUGGAugCGGCcGuGCG-GGCGCAc -3' miRNA: 3'- uCCACUUugGUUGuCuCGUgCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 76723 | 0.68 | 0.866837 |
Target: 5'- uGGUG-GACCAGaCGGAGaa-GGCGCGc -3' miRNA: 3'- uCCACuUUGGUU-GUCUCgugCCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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