Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5781 | 5' | -57.2 | NC_001806.1 | + | 15078 | 0.68 | 0.807508 |
Target: 5'- aCUGGuCUCGGGGCgCGCGGgggaguuguugggaUCGGGGGa -3' miRNA: 3'- gGGUU-GAGCCUUGgGCGCC--------------AGUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 3416 | 0.68 | 0.81009 |
Target: 5'- gCCAGCgccuccaGGAuCCCGCGG-CAGGcGg -3' miRNA: 3'- gGGUUGag-----CCUuGGGCGCCaGUCCuC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 72372 | 0.68 | 0.81009 |
Target: 5'- gUCgGGCcCGGAACCCGCGGcUCcugcGGAc -3' miRNA: 3'- -GGgUUGaGCCUUGGGCGCC-AGu---CCUc -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 84422 | 0.68 | 0.81009 |
Target: 5'- cCCCGAgaCGcAGCCCGgGGaCGGGGGc -3' miRNA: 3'- -GGGUUgaGCcUUGGGCgCCaGUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 6252 | 0.68 | 0.813511 |
Target: 5'- cCCCGGCUCGGGaucgggaucGCaucggaaagggacaCGCGGacgCGGGGGg -3' miRNA: 3'- -GGGUUGAGCCU---------UGg-------------GCGCCa--GUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 122561 | 0.68 | 0.818595 |
Target: 5'- gCCCGuuuUUUGGGgggGCCCGUGGUCuccgugaggcuGGAGg -3' miRNA: 3'- -GGGUu--GAGCCU---UGGGCGCCAGu----------CCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 2820 | 0.68 | 0.818595 |
Target: 5'- gCgGGCUCGGGcCCCGgGGgcguGGAGg -3' miRNA: 3'- gGgUUGAGCCUuGGGCgCCagu-CCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 121337 | 0.68 | 0.818595 |
Target: 5'- -aCAGCUCgcggaGGAGCCaGUGGUCGGcGAGc -3' miRNA: 3'- ggGUUGAG-----CCUUGGgCGCCAGUC-CUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 56652 | 0.67 | 0.826111 |
Target: 5'- aUCGGC-CGGcGGCCCGUgggaucguuggggGGUCGGGGGg -3' miRNA: 3'- gGGUUGaGCC-UUGGGCG-------------CCAGUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 85942 | 0.67 | 0.826938 |
Target: 5'- gCCAGCUCGGAcaccagcaGCuuGCGGggcuuGGAc -3' miRNA: 3'- gGGUUGAGCCU--------UGggCGCCagu--CCUc -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 57663 | 0.67 | 0.830228 |
Target: 5'- cCCCGgaaggcggagaaggcGC-CGGGGCuuGCuucuccGGUCGGGAGg -3' miRNA: 3'- -GGGU---------------UGaGCCUUGggCG------CCAGUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 102746 | 0.67 | 0.835111 |
Target: 5'- uCCCGAaagUCGGcACUgcggGUGGUCAGGGGa -3' miRNA: 3'- -GGGUUg--AGCCuUGGg---CGCCAGUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 130829 | 0.67 | 0.835111 |
Target: 5'- gCCuGCaUUGGGACUCgGCGGcCGGGGGa -3' miRNA: 3'- gGGuUG-AGCCUUGGG-CGCCaGUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 23375 | 0.67 | 0.835111 |
Target: 5'- cCCCGGCUCGGAcGCCCGCGc------- -3' miRNA: 3'- -GGGUUGAGCCU-UGGGCGCcaguccuc -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 149524 | 0.67 | 0.840728 |
Target: 5'- cCCCAACagGGcGACCCcgGUcccuguauauauagGGUCAGGGGg -3' miRNA: 3'- -GGGUUGagCC-UUGGG--CG--------------CCAGUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 93871 | 0.67 | 0.843108 |
Target: 5'- uCCCGGCUUGccggucggcGGGCCCGCGGgaggCcgccccgaagAGGGGg -3' miRNA: 3'- -GGGUUGAGC---------CUUGGGCGCCa---G----------UCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 143582 | 0.67 | 0.850149 |
Target: 5'- aCCCAcCUCGGGauacccaGCCC-CGGUCccccguuccccGGGGGc -3' miRNA: 3'- -GGGUuGAGCCU-------UGGGcGCCAG-----------UCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 27311 | 0.67 | 0.850149 |
Target: 5'- aCCAGCguccgccgagucuUCGGGGCCCGgcccauUGGgCGGGAGu -3' miRNA: 3'- gGGUUG-------------AGCCUUGGGC------GCCaGUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 53870 | 0.67 | 0.850922 |
Target: 5'- gCCAGCUguuUGGcAGCCgCGCGGggaUCAGGGu -3' miRNA: 3'- gGGUUGA---GCC-UUGG-GCGCC---AGUCCUc -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 6177 | 0.67 | 0.850922 |
Target: 5'- -gCGGCUgCGGAGCaCGCGGacCGGGAGc -3' miRNA: 3'- ggGUUGA-GCCUUGgGCGCCa-GUCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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