miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5781 5' -57.2 NC_001806.1 + 64953 0.7 0.668636
Target:  5'- aCCGGCgUCGGcGCCCG-GGcCGGGGGu -3'
miRNA:   3'- gGGUUG-AGCCuUGGGCgCCaGUCCUC- -5'
5781 5' -57.2 NC_001806.1 + 3312 0.7 0.684527
Target:  5'- -gCGGCggggaagCGGGGCCCGCGGgucccuccggccgCGGGGGg -3'
miRNA:   3'- ggGUUGa------GCCUUGGGCGCCa------------GUCCUC- -5'
5781 5' -57.2 NC_001806.1 + 21513 0.7 0.708155
Target:  5'- cCCCGGCcCGGGG-CCGCGaaCGGGAGg -3'
miRNA:   3'- -GGGUUGaGCCUUgGGCGCcaGUCCUC- -5'
5781 5' -57.2 NC_001806.1 + 85726 0.7 0.708155
Target:  5'- aCCCAccGCcCcGAACCCuGCGGUCcGGAGc -3'
miRNA:   3'- -GGGU--UGaGcCUUGGG-CGCCAGuCCUC- -5'
5781 5' -57.2 NC_001806.1 + 130442 0.69 0.717901
Target:  5'- gCCCAGCgcgaucuaCGGGAgCUGCGGUgcCGGGAu -3'
miRNA:   3'- -GGGUUGa-------GCCUUgGGCGCCA--GUCCUc -5'
5781 5' -57.2 NC_001806.1 + 7387 0.69 0.727578
Target:  5'- cCCCGGuCUCccagGGAGCCC-CGGUCuccccGGGAGc -3'
miRNA:   3'- -GGGUU-GAG----CCUUGGGcGCCAG-----UCCUC- -5'
5781 5' -57.2 NC_001806.1 + 43284 0.69 0.727578
Target:  5'- uUCCGccCUCGGAggcggAgCCGCGGcugCAGGAGg -3'
miRNA:   3'- -GGGUu-GAGCCU-----UgGGCGCCa--GUCCUC- -5'
5781 5' -57.2 NC_001806.1 + 81611 0.69 0.737176
Target:  5'- gCCA--UCGGGACCgGaGGUCGGGAa -3'
miRNA:   3'- gGGUugAGCCUUGGgCgCCAGUCCUc -5'
5781 5' -57.2 NC_001806.1 + 4345 0.69 0.746686
Target:  5'- gCCCGgcggcGCUCGaugcGGCCCGCGGaggccgCGGGGGu -3'
miRNA:   3'- -GGGU-----UGAGCc---UUGGGCGCCa-----GUCCUC- -5'
5781 5' -57.2 NC_001806.1 + 2784 0.69 0.7561
Target:  5'- gCCgCGGCggccCGGGGCgCCGCGGgcugggCGGGGGc -3'
miRNA:   3'- -GG-GUUGa---GCCUUG-GGCGCCa-----GUCCUC- -5'
5781 5' -57.2 NC_001806.1 + 41718 0.69 0.762628
Target:  5'- cCCCGggACUggCGGGcgcaaacgcgggccACCCGCGGgggacCAGGAGc -3'
miRNA:   3'- -GGGU--UGA--GCCU--------------UGGGCGCCa----GUCCUC- -5'
5781 5' -57.2 NC_001806.1 + 30627 0.69 0.764484
Target:  5'- cUCCGACUCaGGGCCgggggggCGCGGcCAGGGu -3'
miRNA:   3'- -GGGUUGAGcCUUGG-------GCGCCaGUCCUc -5'
5781 5' -57.2 NC_001806.1 + 26975 0.69 0.76541
Target:  5'- gCCgCGGCUCGuGGGCCCGCGaG-CGGGc- -3'
miRNA:   3'- -GG-GUUGAGC-CUUGGGCGC-CaGUCCuc -5'
5781 5' -57.2 NC_001806.1 + 1426 0.68 0.78368
Target:  5'- gCCCAGCgaaucccgggCGGcGCCgGCGG-CAGGGc -3'
miRNA:   3'- -GGGUUGa---------GCCuUGGgCGCCaGUCCUc -5'
5781 5' -57.2 NC_001806.1 + 18564 0.68 0.78368
Target:  5'- -aCAGCgaGGGACCCGCGGgguUCuGGGGu -3'
miRNA:   3'- ggGUUGagCCUUGGGCGCC---AGuCCUC- -5'
5781 5' -57.2 NC_001806.1 + 37791 0.68 0.78368
Target:  5'- gCCGggGCgcgGGggUCCGCGGgCGGGGGg -3'
miRNA:   3'- gGGU--UGag-CCuuGGGCGCCaGUCCUC- -5'
5781 5' -57.2 NC_001806.1 + 4938 0.68 0.78368
Target:  5'- gCCGGCgUCGGuGCCCGCcG-CGGGGGc -3'
miRNA:   3'- gGGUUG-AGCCuUGGGCGcCaGUCCUC- -5'
5781 5' -57.2 NC_001806.1 + 6058 0.68 0.789956
Target:  5'- gCCCGACUCcgcgccggccccggGGGcggGCCCggGCGG-CGGGGGg -3'
miRNA:   3'- -GGGUUGAG--------------CCU---UGGG--CGCCaGUCCUC- -5'
5781 5' -57.2 NC_001806.1 + 4053 0.68 0.792625
Target:  5'- gCCCAGCUCGGGcGCCCacaCGGcCGccGGGGc -3'
miRNA:   3'- -GGGUUGAGCCU-UGGGc--GCCaGU--CCUC- -5'
5781 5' -57.2 NC_001806.1 + 21284 0.68 0.801431
Target:  5'- gCCCGGCgggaCGGGAgggccCCCGCGG-CGGGc- -3'
miRNA:   3'- -GGGUUGa---GCCUU-----GGGCGCCaGUCCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.